Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5167 125 6e-24 seq46366 118 9e-22 seq74741 111 1e-19 >seq5167 Length=31550 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | |||| || |||||||| || | ||| || ||| | Sbjct 319 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 260 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || ||| ||||||| | || |||||||| || ||| Sbjct 259 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGA 200 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || || || || | | |||||| | | ||||| Sbjct 199 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCGACC 140 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| |||||||| || ||||| || || ||||||||||||||||||| Sbjct 139 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 91 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | |||| || |||||||| || | ||| || ||| | Sbjct 547 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 488 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || |||||||| || ||| ||||||| | || |||||||| || ||| Sbjct 487 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGA 428 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||| || | | || ||| | | || || Sbjct 427 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACC 368 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| |||||||| || ||||| || || ||||||||||||||||||| Sbjct 367 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 319 >seq46366 Length=3433 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| || |||| |||| ||| | |||| || |||||||| || | ||| || ||| Sbjct 2911 TCCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 2970 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| ||| |||| ||| || || ||||||| | || |||||||| ||||| Sbjct 2971 CAGGGTGCGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 3030 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| ||||| ||||| | || || |||||||| | | |||||| | | || || Sbjct 3031 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 3090 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 3091 TTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGC 3140 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| ||||||||||| || || ||||| || | ||| || || | Sbjct 3140 CCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3199 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||| || || || ||||||| | || |||||||| || ||| Sbjct 3200 AAGGTGCGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 3259 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || |||||||| | | |||||| | | || || Sbjct 3260 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 3319 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || ||||||||||||||||| Sbjct 3320 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3366 >seq74741 Length=209 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||||||||||||| ||||||| || || ||||| || ||||| || ||||| || Sbjct 174 ATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTT 115 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || ||||||||||| | | |||||| | || || || | ||||| Sbjct 114 GTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTCGGCTCCACCTCGAGAGTGAT 55 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || ||||| ||||||||||| Sbjct 54 GGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447707631326760