Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq33371 123 4e-24 seq18766 95.1 2e-15 seq68288 89.7 8e-14 >seq33371 Length=11594 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 9910 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 9969 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 9970 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 10029 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || || ||| || || Sbjct 10030 GCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACTGA 10089 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| || || ||||||| | ||||| || | || || || || Sbjct 10090 GCACGCTAAGAGGAAGACGGTGACGGCCATGGACGTGGTCTACGCTCTCAAGCGCCAGGG 10149 Query 16672 CCG 16674 || Sbjct 10150 ACG 10152 >seq18766 Length=1180 Score = 95.1 bits (104), Expect = 2e-15 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 16490 ATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAG 16549 ||||| || |||||||| || || || || ||||| |||| || | |||| || ||| Sbjct 3 ATCCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAG 62 Query 16550 ATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 | || | || ||||| | ||||| ||| ||| |||| ||||| || ||||||| Sbjct 63 ACGCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGATGCCGTCACCTATACC 122 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 ||||||||||| | ||||| || || ||||||| | ||||| || | || || || Sbjct 123 GAGCACGCTAAGAGGAAGACGGTGACGGCCATGGACGTGGTCTACGCTCTCAAGCGCCAG 182 Query 16670 GGCCG 16674 || || Sbjct 183 GGACG 187 >seq68288 Length=3383 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16490 ATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAG 16549 ||||| || |||||||| || || || || ||||| |||| || | |||| || ||| Sbjct 205 ATCCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTTATCTACGAGGAG 264 Query 16550 ATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 | || | || ||||| | ||||| ||| ||| |||| ||| ||| || ||| || Sbjct 265 ACGCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCTGTCACCTACACG 324 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTA 16653 ||||||||||| | ||||| || || ||||||| | ||||| Sbjct 325 GAGCACGCTAAGAGGAAGACAGTGACGGCCATGGACGTGGTCTA 368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78979983154713