Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq46366 100 2e-16 >seq46366 Length=3433 Score = 100 bits (110), Expect = 2e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| || || | ||||| || | || || | ||||| ||| || Sbjct 3369 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTTGAGCCC 3310 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||| ||| | ||||| ||||| ||||| |||||||| || |||||| Sbjct 3309 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGAT 3250 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || ||||| ||||| | | ||||||||||| ||||||| Sbjct 3249 CAGCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATG 3210 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| | ||||| ||| ||| Sbjct 3138 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 3079 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 3078 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAG 3019 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| | ||||||| | | | | ||| || ||| Sbjct 3018 CAGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGCACCCTGTCCGACTACAAC 2959 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || ||||| || | ||| | ||| | | |||| || ||| Sbjct 2958 ATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGGA 2911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429390317301855