Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5167 118 1e-21 seq42353 98.7 9e-16 >seq5167 Length=31550 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||||| | ||| | ||| || ||||| || |||||||| ||| Sbjct 549 AGCCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 490 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||||||| ||| || ||||||||||| || |||| | | |||||| || || | Sbjct 489 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGG 430 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||| ||||| ||| || ||| | | ||| | ||||| ||| ||| | Sbjct 429 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAA 370 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 369 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 320 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| | ||| | ||| || ||||| || |||||||| ||| Sbjct 320 GCCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 261 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 260 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGGGG 201 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || || | | ||| | || || ||| ||||| Sbjct 200 AATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCGAC 141 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 140 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 92 >seq42353 Length=33545 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 |||| |||||| ||||||||||| |||| || |||||||| || |||| |||||| | | Sbjct 26763 CACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAG 26822 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 || ||||| |||||||||||| ||||||||| Sbjct 26823 TCTTTGTACAGCATGTACGGTGTGCCAGTCTC 26854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471398351437440