Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5167 100 2e-16 seq75127 96.9 2e-15 seq3881 95.1 8e-15 seq35107 82.4 5e-11 >seq5167 Length=31550 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||| | ||| || ||| ||||| || || ||||| || ||| Sbjct 547 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 488 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || |||||||| || || | || ||||||| ||| Sbjct 487 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGA 428 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || ||||||||||| | ||||| | ||||| Sbjct 427 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACC 368 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||| ||| ||||| || ||||||||| Sbjct 367 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 320 >seq75127 Length=211 Score = 96.9 bits (106), Expect = 2e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 19953 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAAT 20012 |||||||||||||||||||||||||| |||||||||||| ||||||||||||| | | Sbjct 1 CTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATCGGTCTCGTGCCGGT 60 Query 20013 ATTTAGCCTTA 20023 ||||||||||| Sbjct 61 ATTTAGCCTTA 71 >seq3881 Length=9694 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || |||| |||| ||||||||||| | Sbjct 4962 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACTGTACGTGTTGGCTATCGGTCTTGT 4903 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 4902 GCCGGTATTTAGCCTTA 4886 >seq35107 Length=12434 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || || |||| |||||||||||||||||| ||||||| ||||| || |||||| | Sbjct 9462 AAACCTGTTCTCTTGGCTGTGGTTTCGCTGGATAGTAAGTAGGGACAGTGGGAATCTCAT 9403 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| | ||||||||| |||| || Sbjct 9402 TCATCCATTCATGCACATCACTAATTGAATGATGA 9368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334522078838171