Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5167 113 4e-20 >seq5167 Length=31550 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || ||| | | Sbjct 93 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 152 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| |||| || ||| ||||| ||||| ||||| ||||| || Sbjct 153 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 212 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| || ||| ||||| Sbjct 213 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 272 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | ||||| Sbjct 273 ATCCAGAAGGAATCCACCCTGCATCTTGTGCT 304 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || ||| | | Sbjct 321 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 380 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| || ||| ||||| ||||| ||||| || || || Sbjct 381 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 440 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||| | ||||| || ||| ||||| Sbjct 441 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 500 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | ||||| Sbjct 501 ATCCAGAAGGAATCCACCCTGCATCTTGTGCT 532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432778012112915