Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq42353 96.9 7e-15 seq63031 93.3 8e-14 >seq42353 Length=33545 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||||||||| ||||| ||||||||||| ||| ||||| |||| | |||||| || Sbjct 28101 CATGAAGAGATCGGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 28160 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 |||||||||||| | | || | ||| ||||||| ||| | ||||| ||||||| ||| Sbjct 28161 CCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCACGGCTCCAGGTA 28220 Query 245131 GACAGCGAGGGCGCCGGGCCGCT 245153 || || | || || |||| || Sbjct 28221 GATGGCAAAAGCCCCAGGCCTCT 28243 >seq63031 Length=34312 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 23806 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 23747 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || ||||| Sbjct 23746 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 23687 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 23686 ATTAGCAGAGATGAGG 23671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943109894642160