Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq74741 96.9 3e-15 seq42353 91.5 1e-13 seq5167 89.7 5e-13 seq46366 82.4 8e-11 >seq74741 Length=209 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 || || || ||||||||||| || ||||| || || || ||||| |||| | || Sbjct 209 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAG 150 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT 138543 || | | ||| ||||| ||||| || ||||| ||||| ||| ||| || | | Sbjct 149 ATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 90 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||| ||| ||||||||||| || | || ||||||||||| || || || Sbjct 89 TCAATGGTGTCACTCGGCTCCACCTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTCACG 30 Query 138604 AAAATCTGCAT 138614 || |||||||| Sbjct 29 AAGATCTGCAT 19 >seq42353 Length=33545 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| || || | || || ||||||||||| ||| ||||| || ||||||||| Sbjct 26745 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 26804 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 || || || ||||| | ||||||| | |||||||||||| ||| ||||| Sbjct 26805 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTC 26854 >seq5167 Length=31550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || |||| || | ||| | | | || ||||| || |||||||||||| Sbjct 320 GCCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 261 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || || || || |||| | |||| || | ||| || || || || Sbjct 260 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGGGG 201 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || ||| | | || | |||||| | | ||| || Sbjct 200 AATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCGAC 141 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || |||||||| || || ||||| ||||||||| Sbjct 140 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 92 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 ||||| || | || |||| || | ||| | | | || ||||| || |||||||||||| Sbjct 550 CAGCCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 491 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 || || ||| ||| || || || || |||| | |||| || | ||| || || || Sbjct 490 GACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGG 431 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || ||||| ||||| ||| || || | | || | ||| || | | ||| Sbjct 430 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCA 371 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| | || | || || |||||||| || || ||||| ||||||||| Sbjct 370 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 320 >seq46366 Length=3433 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||||| || || || | | | |||||||| || ||||||||||| Sbjct 3139 GCCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 3198 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || ||||| || || | | |||| || | ||| || || || || Sbjct 3199 CAAGGTGCGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 3258 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | | ||| || Sbjct 3259 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 3318 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || ||||| |||||||| Sbjct 3319 TTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495616384217520