Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq13386 152 7e-32 seq41007 96.9 5e-15 >seq13386 Length=23710 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| || || || || ||||| || Sbjct 3177 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 3118 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| |||||||||||||| || || || Sbjct 3117 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTGGCGTACATCATCAAGCCTGGG 3058 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||| ||||| || | ||| || | ||| ||| | || || || | || | Sbjct 3057 ACCAAACCGAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 2998 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| |||||||| | | Sbjct 2997 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATC 2938 Query 9967 TG 9968 || Sbjct 2937 TG 2936 Score = 147 bits (162), Expect = 3e-30 Identities = 210/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| |||||||| ||| || | ||| ||| | || || | Sbjct 5232 GGAAAGCAGTGAAAGGACAGCCCTTCACGTTGTTGCAGACGAGCTTCTGTAAGGAGGCAG 5173 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || ||||||||||| || ||||||||| | |||| Sbjct 5172 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCAGGGG 5113 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| |||||||| || || | ||| | || Sbjct 5112 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAAAACGGTGCTCCGATCTCCACCATTG 5053 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || ||||| |||| | ||| | ||| || || | Sbjct 5052 TTTCACCAAAGATGGCACCCGGTCGTGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 4993 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 4992 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 4937 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | |||| ||| | ||| Sbjct 4395 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGTATCTGGAAAGTG 4336 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| |||||||| ||||| || |||||||||||| Sbjct 4335 TCAGGCAGGAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCGGCTGCAATTCGGTTCTGG 4276 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || || || | || | ||||||||| | Sbjct 4275 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCGAACTTGAGTTTGAAGTGGTAGC 4218 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | || || ||||| Sbjct 4217 CACTCAAGTGTTGCACATA 4199 >seq41007 Length=24362 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| ||||| |||||||||||||| | |||||||||||| ||| | | || || Sbjct 10232 CCGCCAAAGGTACTGGGTTTCCAGTAGTCTGGGGAGCAGATGGGGTTTCCAAGAAGGCCC 10173 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| ||||||||||| || | ||| | ||||| || || || || || ||| | Sbjct 10172 TTCAGCGAAAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTTGG 10113 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| || | || | ||| || | ||| ||||| || || Sbjct 10112 GGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 10053 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 10052 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 10020 Score = 86.0 bits (94), Expect = 9e-12 Identities = 161/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGC 9544 ||||| ||||| ||||||| | ||| || ||||| | |||| | | ||| ||| Sbjct 8656 ATGAGCATGGAGGTGTTGTAGAGGAACTGCTCGTAGCTGTACTCTTC--CCCCTGGATGA 8599 Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 || || |||| ||| |||||| | ||||| ||||||||| | || || | Sbjct 8598 TGAAGGAGTCGGGCATCAGCCCGTGCCAGTGATAGAGCTGATTGAACTCCACTGCGATGC 8539 Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 | ||| ||||||| || || || ||||| | ||| ||||| || | || | || Sbjct 8538 GATTCCGGTACTGGAACTGCGTCCCAAACAGCAGCTCGGGGTCGAACTTGAGGCTCAGGT 8479 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||||||||||| ||||||||||| | | || | || |||||||| ||||| Sbjct 8478 AGTACCCGCTGAGGTGCTGGACATAGTCTTCAATGACGATCTTAATGGTCTCCCC 8424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722785878029400