Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq97288 105 3e-17 seq53946 84.2 9e-11 >seq97288 Length=2457 Score = 105 bits (116), Expect = 3e-17 Identities = 278/419 (66%), Gaps = 9/419 (2%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | | ||||| | || || ||||| | || || || || || || Sbjct 2121 GGCAAGCCCAAGGTGCAAGTGGAGTACAAGGGTGAGATGAAGACCTTCTTCCCAGAGGAG 2062 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || ||||| ||||| || ||||| || | || || ||| | || | | | Sbjct 2061 ATCAGCTCCATGGTCCTTACCAAGATGAAGGAGATCGCTGAGGCCTATCTGGGG-CGCAA 2003 Query 451313 GTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 | | | || ||| || || || || || ||||| |||||||| | || || || || || Sbjct 2002 GGTGCAGAATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCAC 1943 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| || || |||| | ||||| | || ||||| ||||| || ||||| Sbjct 1942 CAAAGATGCTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGC 1883 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATT 451486 ||||||| |||| ||||| || ||| || ||| | | | | ||| || || | Sbjct 1882 AGCTGCTATAGCCTATGG-CTTGGACAA-GAAAGGTACGCGGGCTGGAGAGAAGAACGTG 1825 Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG 451546 | | |||||||| || || || ||| |||| || | ||| | ||||| ||||| Sbjct 1824 CTCATCTTTGATTTGGGAGGGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGC 1765 Query 451547 GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | ||||| || ||| | || |||||| || ||||| || || || || |||| || Sbjct 1764 ATCTTTGAGGTGAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 1706 >seq53946 Length=1272 Score = 84.2 bits (92), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| |||||||||| || | ||| | | || ||||| ||||||||| Sbjct 613 AAAGCCAAGCCCCATATTCAAGTCGATGTTGGAGGCGGACAGACAAAAACATTTGCTCCT 672 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| ||||||| || || || ||||| ||||| ||||| Sbjct 673 GAAGAAATTTCTGCTATGGTCCTGACAAAGATGAAGGAAACTGCAGA 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973082185973228