Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq66646 118 8e-21 seq103987 104 2e-16 >seq66646 Length=10888 Score = 118 bits (130), Expect = 8e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||||||||| |||||| |||| | || || ||||| ||||||| Sbjct 10444 CAAAAACCGTATTGGTTGGATTCATTGCAACTTGGTTCTTCGCAGCATCACCAATCAACC 10503 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | ||| || ||| || || || ||||| || ||||| |||| Sbjct 10504 TCTCTGTATCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 10563 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || |||| ||| ||||||| ||||| | | || || || | ||||| Sbjct 10564 TGATTTCCACCTTCCCATGTTGAAATACACCAACACAGGAATAGGTGGTGCCAAGATCAA 10623 Query 518703 TACCAATAGC 518712 | || | ||| Sbjct 10624 TTCCGACAGC 10633 >seq103987 Length=11775 Score = 104 bits (114), Expect = 2e-16 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 312 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 371 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || || || ||| | || ||| |||||||||||||||||| ||||| ||||| Sbjct 372 TCATTACGGTGCCCCTAAGGAAATGGAATCTTATTATCAAGAAATTGGGAGAGCTGGTCG 431 Query 367113 TGATGGA 367119 |||||| Sbjct 432 CGATGGA 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3775654580539546