Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq97288 313 3e-80 seq66646 210 3e-49 seq53946 87.8 2e-12 >seq97288 Length=2457 Score = 313 bits (346), Expect = 3e-80 Identities = 1043/1601 (65%), Gaps = 40/1601 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || ||||| ||||| ||||| |||||||| || || | Sbjct 820 TTCATCCTCCGCTTTGTATTTCTCCGCTTCTTGCACCATACGGTCAATGTCATCCTT-GC 878 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| ||||| || || || ||||| | ||||||| | ||| || Sbjct 879 TAAGGCGGCCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 938 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | || || || |||| |||||||| ||||| | || || | || | || || || Sbjct 939 CTGCGCTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 998 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || ||||||| |||||| | || || || |||| ||| Sbjct 999 CTCCGCGGGGTGCCGGGGGGATGCCCGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 1058 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGT 6865 ||| | | | ||||| ||||| || | | || || | | || || ||| Sbjct 1059 TCGTCATAGCCCTCTCACCCTCATACACCTGGACCAGGAC-GCTGCTCTGGTTGTCTGAG 1117 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | |||| | || || || | ||||| || || || | | || | | | Sbjct 1118 TAAGTGGTGAAGGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCG 1177 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | ||||| || |||| || || |||||||| || || ||||| || ||| Sbjct 1178 GTCATCACGCCACCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAAC 1237 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || || || ||| || | || ||| | | ||| || ||||| || | || || Sbjct 1238 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACGGCAGCGCCA 1297 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || ||||||||||| || || | || || || ||||| || || || | ||| Sbjct 1298 TAAGCAACAGCCTCATCGGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 1357 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || || | ||| || || ||||| || || || ||||| |||| ||||| || | Sbjct 1358 TGTAGCAGCTTTTGGATCTTGGGGATACGAGTGGAGCCACCCACCAGCACGATCTCCTGG 1417 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | | || || | ||| | || || || | || || || || |||| | Sbjct 1418 ATCTGGCCCTTGTCTAGCTTGGCATCGCGCAGAGCCTTCTCCACTGGCTCCAGGGTGCCA 1477 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| | || ||||| || || ||||| |||||||| || ||||| ||| Sbjct 1478 CGGAAGAGGTCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAGGTGTAGAAGTCA 1537 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAACGTT 7342 | ||| ||||| | || || || |||||| | | ||| ||| ||||| | || Sbjct 1538 ATGCCCTCGTACAGGGAGTCGATCTCAATGCTAGCTTG---CGTGGAAGAGCTGAGGGTG 1594 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || | |||||| ||||| || | || | | || ||| ||| || | ||| Sbjct 1595 CGCTTCGCCCTCTCACAAGCCGTACGCAGTCGCCTCACCGCTCGCTTGTTGCCAGCAATG 1654 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGA--AGGAGTCTCGAATCG 7459 || ||| || ||||| || || |||| || | || || | | | | | || Sbjct 1655 TCGCGCTTGTGCTTACGCTTGAATTCTTCCACAAAATGGTTCACCATGCGGTT---GTCA 1711 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||| || || || || || || | || || |||||||| || | Sbjct 1712 AAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCC 1771 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | | | || |||||||| || || || |||| ||||| ||||| |||||| Sbjct 1772 TCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAATCAAAGATGAGCACGTTC 1831 Query 7580 GTATC----GTCGTCTT--TGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || | | | | ||||| || | || || || ||||| || || || || Sbjct 1832 TTCTCTCCAGCCCGCGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGGGC 1891 Query 7634 TCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 ||||| |||||||| | ||| || ||||||| || || | |||||||| || || || Sbjct 1892 TCATTGATAATACGCATCACA-TTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTG 1950 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || || || ||||| || || || || | ||| || | | || || || Sbjct 1951 GCGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATGACAGCATTCTGCACCTTGCGCCC 2010 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||||| | || ||||| || ||||| |||||||| ||||| || ||||| || | Sbjct 2011 CAGATAGGCCTCAGCGATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCTG- 2069 Query 7813 CGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 | | | || ||| | ||||| || | || |||| | | |||| || || ||| Sbjct 2070 GGAAGAAGGTCTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGCTT----GC--CAC 2123 Query 7872 CGGGGATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAA 7928 | | ||| | | | ||| | ||||| || | || ||| |||| Sbjct 2124 CCTCATTCACCACACGGAAGGGCCAGTGCTTCATGTCAGCCTGCACCGTGGGGTCATCGT 2183 Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 |||| | ||||| |||||||| ||||| || | ||||| |||||||||| || | Sbjct 2184 ACTTGCGGCCGATGAGACGCTTGGCATCGAAGATGGTGTTGGTGGGGTTCATAGCCACCT 2243 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 ||||||| || || || ||||| || || || || || || || || || || | || Sbjct 2244 GGTTCTTGGCAGCATCGCCGATGAGGCGCTCTGTA---TCGGTGAAGGCCACATA-GCTG 2299 Query 8049 GG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || || || || ||||| || || || || || || | | | ||| |||| Sbjct 2300 GGCGTGGTGCGGTTGCCCTGGTCATTGGCGATGATCTCCACTTTGCCATGTTGAAAGACA 2359 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| || ||||| || || || || || |||||||| Sbjct 2360 CCCACGCAGGAGTACGTGGTGCCCAAGTCGATGCCGATTGC 2400 >seq66646 Length=10888 Score = 210 bits (232), Expect = 3e-49 Identities = 374/543 (69%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 ||||| || || || || ||||| || || || | || ||||| ||||| || || || Sbjct 8601 GCCCCATAAGCCACGGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 8660 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || ||||| || ||||| || || || ||||| |||| ||||| Sbjct 8661 AAATCCTGCAGCAGTTTCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACGATG 8720 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | |||||| || | ||| | || || || | ||||| ||||| |||| Sbjct 8721 TCATGGATCTGCGATTTGTCAAGCTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAGG 8780 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| | ||| || ||||| || || | |||||||||||| ||| Sbjct 8781 GTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTGTAG 8840 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | |||||||||||||| | | || | | || || | Sbjct 8841 AAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGACGACAGA 8900 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| || || || || | ||||||| || | | ||| || Sbjct 8901 GTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCGCTG 8960 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || || || | ||||| || || | | | | Sbjct 8961 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCGGTT---G 9017 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| || || || || || | ||| ||||||||||| || Sbjct 9018 TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACTTCAAAGATGCCA 9077 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || |||||||| || || || Sbjct 9078 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAGAACA 9137 Query 7577 TTC 7579 ||| Sbjct 9138 TTC 9140 >seq53946 Length=1272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| || ||||| ||||| || || | ||| | |||||| || |||||||| Sbjct 251 CCGATGAGCCGCTTGGCATCGAACACCGGGTTCTCGGGGTTGGAGGTAAGCTGGTTCTTG 192 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||||||||| | || || | ||| ||||| ||||| || || || | Sbjct 191 GCGGCGTCCCCGATCAAGCGCTCCCCCTCGGGCGTGAACGCCACGTAGGACGGCGTGATG 132 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 || ||||| |||||||| || || ||||| |||||| | || | ||||||| |||| Sbjct 131 CGGTTCCCCTGGTCGTTGGCGATGATTTCCACGCGGCCATTCTTGAAGACGCCCACGC 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634306007938440