Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq46366 131 4e-25 seq5167 118 2e-21 seq74741 113 1e-19 seq49135 89.7 1e-12 >seq46366 Length=3433 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| |||| || || | ||||||||| Sbjct 2930 ACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 2989 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || | || || || |||||||||||||| ||||| || Sbjct 2990 AACTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 3049 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| || ||||| ||||| | ||| Sbjct 3050 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATGGTC 3106 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||| || || || || | ||||| Sbjct 3107 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3138 Score = 122 bits (134), Expect = 2e-22 Identities = 166/228 (73%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 |||||| | || || | ||| || |||||||| || || || ||||| || | |||| | Sbjct 3145 TCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAG-G 3203 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 | | ||||||||| || ||||| || || ||||| || | || || || || ||||||| Sbjct 3204 TGCGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGC 3263 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTT 195094 |||| ||||| || || || |||||| |||||||||||||| ||| || |||| Sbjct 3264 CTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTT 3320 Query 195095 CAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | || || | ||||| || |||| || || || || | ||||||| Sbjct 3321 CCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTT 3368 >seq5167 Length=31550 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| |||| || || | ||||||||| Sbjct 301 ACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 242 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 241 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 182 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || || |||||||||||||| ||| || || |||||||| | ||| Sbjct 181 ATCTTGGCTTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATGGTC 125 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 124 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 93 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| |||| || || | ||| ||||| Sbjct 529 ACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCC 470 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 469 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 410 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||||||||| || ||| || || |||||||| | ||| Sbjct 409 ATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCAACCTCAAGGGTGATGGTC 353 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 352 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 321 >seq74741 Length=209 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||||| || || ||||| || | || || | |||||||| ||||| || || || ||| Sbjct 209 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAG 150 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | | || ||||| ||||| |||||||| |||||||| || ||| |||||| ||| Sbjct 149 ATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 90 Query 195070 TCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 ||||||||||| ||| ||||| || || || | ||||| || |||| || || Sbjct 89 TCAATGGTGTC---ACTCGGCTCCACCTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTC 33 Query 195127 ACGAACACTTGCAT 195140 ||||| | ||||| Sbjct 32 ACGAAGATCTGCAT 19 >seq49135 Length=6660 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||||||||| || | || || | |||||||| ||||||||||| || || | Sbjct 6257 CTTTTTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 6316 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || ||||| |||||||||||| Sbjct 6317 TCAGTCGCTGCTGGTCAGGAGGAATGCCT 6345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108001211420147