Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq66646 134 1e-25 seq97288 93.3 3e-13 seq74741 93.3 3e-13 >seq66646 Length=10888 Score = 134 bits (148), Expect = 1e-25 Identities = 118/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| |||||||||||||| || ||||| ||||| Sbjct 9410 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTTAATGACTCTCAGCGTCAGGCTACA 9351 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || ||||| || || |||||||| || || || ||| Sbjct 9350 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCGACAGCT 9291 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 |||||| | || ||||| || || ||| Sbjct 9290 GCTGCAATAGCCTATGGTCTGGACAAA 9264 Score = 100 bits (110), Expect = 2e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||| | || ||||| ||| ||||||||||| | ||| |||| || Sbjct 10634 AGCTGTCGGAATTGATCTTGGCACCACCTATTCCTGTGTTGGTGTATTTCAACATGGGAA 10575 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||||||||| || |||||| | || || ||| || ||| | ||||| Sbjct 10574 GGTGGAAATCATTGCCAATGACCAGGGTAACCGGACCACGCCAAGCTACGTTGCCTTCAC 10515 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168 || || || || |||||||||| || || | |||| || || ||||| ||| Sbjct 10514 AGATACAGAGAGGTTGATTGGTGATGCTGCGAAGAACCAAGTTGCAATG--AATCCAACC 10457 Query 550169 AATACTATTTTTG 550181 ||||| |||||| Sbjct 10456 AATACGGTTTTTG 10444 Score = 91.5 bits (100), Expect = 1e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| |||||||||||||| || ||||| ||||| Sbjct 9610 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTTAATGACTCTCAGCGTCAGGCTACA 9551 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAAT 550480 |||||||||||| ||||| || || ||| Sbjct 9550 AAAGATGCTGGAACCATTGCAGGGCTCAAT 9521 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || |||||||| || || ||||| |||||| Sbjct 7691 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 7632 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||||||| ||||| ||||| Sbjct 7631 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 7600 >seq97288 Length=2457 Score = 93.3 bits (102), Expect = 3e-13 Identities = 350/546 (64%), Gaps = 11/546 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || ||||| || || || ||||| | ||| |||| ||| Sbjct 2400 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTTCAACATGGCAAA 2341 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| || || ||| | || || || ||||| | ||||| Sbjct 2340 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACC 2281 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | || ||||| || || | || | || || || ||||| Sbjct 2280 GATACAGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCCACCAAC 2221 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || || ||||| || ||| | || || | | | |||| | || || ||||| Sbjct 2220 ACCATCTTCGATGCCAAGCGTCTCATCGGCCGCAAGTACGATGACCCCACGGTGCAGGCT 2161 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||| ||||| |||| | || |||| ||| || || | | ||| Sbjct 2160 GACATGAAGCACTGGCCCTTCCGTGTGGTGAATGAGGGTGGCAAGCCCAAGGTGCAAGTG 2101 Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | | || | || | ||||| | || || ||||| Sbjct 2100 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 2046 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | || ||||| | | || || | | | || | | || | |||| || | Sbjct 2045 TTACCAAGATGAAGGAGATCGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCA 1986 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || || || || || |||||||| || || || || || ||||||||||| | Sbjct 1985 TCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCA 1926 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||| |||||||| | |||||||||||||| || || || ||||| | || |||| Sbjct 1925 TCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATG 1866 Query 550527 GACTTG 550532 | |||| Sbjct 1865 G-CTTG 1861 >seq74741 Length=209 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || ||||| |||| || || | |||||| || |||||||||||||| || | || Sbjct 200 ATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTC 141 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| |||||||| || ||||| || ||||| || ||| || || |||||| || Sbjct 140 TGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTG 81 Query 563413 TCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 ||| | | | || |||||||| | || |||||||| || || || ||||| || || Sbjct 80 TCACT-CGGCTCCACCTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTG 22 Query 563472 CAT 563474 ||| Sbjct 21 CAT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4023788554244090