Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq66646 120 2e-21 seq46366 87.8 1e-11 seq103987 86.0 4e-11 >seq66646 Length=10888 Score = 120 bits (132), Expect = 2e-21 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| ||| | ||||| ||||| ||||||||||| ||||| ||||| || || Sbjct 9410 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTTAATGACTCTCAGCGTCAGGCTACA 9351 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| |||||||| || ||||| | || ||||| || || || ||||| Sbjct 9350 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCGACAGCT 9291 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || ||| | || |||||||| || || || Sbjct 9290 GCTGCAATAGCCTATGGTCTGGACAAAAA 9262 Score = 98.7 bits (108), Expect = 6e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 7691 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 7632 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 7631 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 7600 Score = 95.1 bits (104), Expect = 8e-14 Identities = 221/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| || || ||||| ||||| |||| || ||| || || | | | ||||| || Sbjct 8926 ACTGCATGCGAGCGTGCAAAGCGTACTCTGTCGTCTAGCACGCAGGCCAGTATTGAAATT 8867 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 8866 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGAG 8807 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || ||| | | || | ||| | Sbjct 8806 CTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCC 8747 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 || ||||||||||| || ||||||| || || || || || || || || | || ||| Sbjct 8746 AAGCTTGACAAATCGCAGATCCATGACATCGTGCTGGTTGGTGGGTCTACTCGTATCCCA 8687 Query 475736 AA-AATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || | | ||| || ||| | || || | || ||||| ||| || | || | || | | Sbjct 8686 AAGATTCAGA-AACTGC-TGCAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCA 8629 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 ||||||||||||| || || ||||| || Sbjct 8628 ATCCTGATGAAGCCGTGGCTTATGGGGC 8601 Score = 86.0 bits (94), Expect = 4e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| ||| | ||||| ||||| ||||||||||| ||||| ||||| || || Sbjct 9610 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTTAATGACTCTCAGCGTCAGGCTACA 9551 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAAT 474817 |||||||| |||| |||||||| || ||| Sbjct 9550 AAAGATGCTGGAACCATTGCAGGGCTCAAT 9521 >seq46366 Length=3433 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||| |||||||| || || | || ||||| |||||||| |||||||| Sbjct 2983 ATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTT 3042 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| |||||| ||||| || ||| || | | ||| ||||| || Sbjct 3043 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGAT 3102 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 3103 GGTCTTGCCTGTCAGGGTCTTCACAAAGATCTG 3135 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || || | || ||||| || ||||| |||||||| Sbjct 3211 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTT 3270 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| |||||| ||||| || ||| || | | ||| || || || Sbjct 3271 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGAGTGAT 3330 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 3331 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 3363 >seq103987 Length=11775 Score = 86.0 bits (94), Expect = 4e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 ||||| || || ||||| || ||||||||||||||| ||| || | ||||| || || Sbjct 437 CCATCGCGACCAGCTCTCCCAATTTCTTGATAATAAGATTCCATTTCCTTAGGGGCACCG 378 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || |||||||||||||| | ||| || Sbjct 377 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCC 318 Query 627889 AC 627890 || Sbjct 317 AC 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3263712087217868