Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq57109 259 6e-64 seq68496 127 2e-24 >seq57109 Length=76961 Score = 259 bits (286), Expect = 6e-64 Identities = 655/990 (66%), Gaps = 7/990 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 12261 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 12202 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| | ||| || | Sbjct 12201 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTGCCCCAAAAA 12145 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || |||| || ||||| | || ||||||| || || Sbjct 12144 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTCGACATGT 12085 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | ||| | |||||| || |||| Sbjct 12084 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGCGCATTCATGTCAGAAACATCGT 12025 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 12024 ACTTGT-CACTAGAAGAAACTGCACCCGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 11966 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || || || |||||||| ||||| || | ||| || ||||||| ||| ||| Sbjct 11965 AAGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTG 11906 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | |||| || | |||| | || ||||| || || || || || || Sbjct 11905 CTTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 11846 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| || ||||| | || | Sbjct 11845 ATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTACCATCA 11786 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | | ||||| |||||| || Sbjct 11785 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAAGAGGCATTTTTTCCGTTTCC 11726 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 11725 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 11666 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||| | ||| ||||| || | || || || Sbjct 11665 GGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGA 11606 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || ||||| Sbjct 11605 TCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTCT 11546 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 11545 AACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 11487 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | ||||| ||| || || | ||| || | |||||||| || ||||| Sbjct 11486 AAAAGATTCTGGAGACTTTCTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 11427 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 11426 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAAT 11367 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| || | || || || || | | | | ||| || | |||||| | || Sbjct 11366 TGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTCCTAGTCTTGGTGAA 11307 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | | |||| || |||||||| ||||| Sbjct 11306 AGATGCACAGTCTGCTGTCATGTTAATATA 11277 >seq68496 Length=888 Score = 127 bits (140), Expect = 2e-24 Identities = 515/797 (65%), Gaps = 31/797 (4%) Strand=Plus/Minus Query 160187 GCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTT 160246 |||| |||| |||||||| | || || || ||| || || |||||||||||| Sbjct 887 GCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGCTGGTGTCGCCCTCCAGGTACTGCCACTT 828 Query 160247 CACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGC 160306 || | | || | || | |||||| ||| | | | |||| || |||| | ||| Sbjct 827 GACCAGGCGGGGCAGGGCGTTCATGTCCGAGAGCTGGAACTTGTCATTCTGGGGCATGGC 768 Query 160307 ACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGT 160366 || || ||||||||||| || | ||||||||||| | ||| ||||| |||||||| || Sbjct 767 GCCCGGCACGCCGGGCATGCGGTTGAGGGTGGCCCAGACGTGCTCGTCAGGGCTGTAGGT 708 Query 160367 GTCCTTAGACCATTCCATGAACT-CTCCGATTAACCTG----TCCCGCAGAACGTGAGTA 160421 |||||| | ||| || | ||||| || || | || || | || | ||| Sbjct 707 GTCCTTGGCCCACTCGAGGAACTGCTGCG----CCGTGGGGTTCTCAAAG-ATGTGCTGC 653 Query 160422 ACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG-TA--TGGGTATA 160478 ||| ||| | || || || | ||||||| |||| | ||| || || || || | Sbjct 652 ACGAAGGCCCGTGTGACCACGATGTACGCGTTGCCTGTGAACATGGGATAGTTGTGGGGT 593 Query 160479 GGCGGC-GTGTCTTTGT-CCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTC 160536 |||||| || ||| ||| ||| |||| || | | || ||| ||| |||| Sbjct 592 GGCGGCAGTTTCTCTGTGGCTGTCCGG-----GAGATGA-TC--TTCCCCACTTCGTGGT 541 Query 160537 GCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGT-TCCGTCTCTAGACTGTTGGCA 160595 | | || ||| | | |||| | || | || | || | ||| | ||||| Sbjct 540 GGTACTGCCAGCGCTGCTGCTTGAG-GGCCGAGGGCTTCTCTGACTCCATGCTGTTCTGC 482 Query 160596 CCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTA 160655 || | |||| ||||| ||||||||| ||| ||||||| || |||||||| Sbjct 481 CCCTGCAGCGTCTTCAGGGCACGGACGATCTCAGCGTTGGTCTTGATGGGGAAGTCGGTG 422 Query 160656 CCGCACAAGTTTATCACGTACTTCCATTTC---GCGCTCAGGTCGTGCAGGTCCCTCATG 160712 ||||| ||| | | ||| |||| | | |||| | ||||||| |||| Sbjct 421 CCGCAGGTGTTGAGGAAGTAGCGCCATGGCACGGGGCTCCG---CAACAGGTCCTGCATG 365 Query 160713 CAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTG 160772 || || | || ||||||| ||| |||||| || || || || | || | ||| Sbjct 364 CAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCATAGACCACCTCTTCCAAGCGACTA 305 Query 160773 GCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTA 160832 ||||| ||||| || ||| || | ||||| || ||| ||| ||| | Sbjct 304 GCCACGAAGACATTGGGGAAGCAGGCTACGATGGCCCGCACAGCCTCCTGGAAGGTGGCC 245 Query 160833 TCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGC 160892 | ||| | ||| | ||| ||||| || | |||||| || | ||||| || || || Sbjct 244 GGGGACTTGCTGTCAATGTGGACGCAGTAGACGTTCTGGGGGGTGTAGAGGGACCGCAGG 185 Query 160893 AACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCG 160952 | || |||||||||||| || || | ||||| || || |||||||| || || ||||| Sbjct 184 AGCCGCTCGAACATCTCGATTTTGTTGTGGATGACCATGGAGTAGGCGATGGGGAACTCT 125 Query 160953 GTCTCCTCGCGACTCAG 160969 | |||||| | ||||| Sbjct 124 GCCTCCTCCTGGCTCAG 108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576467797691160