Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq32459 176 5e-38 seq29057 161 1e-33 seq10856 158 1e-32 seq57142 138 1e-26 >seq32459 Length=1270 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | | Sbjct 582 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGGGG 641 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 642 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 701 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 702 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 761 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 762 GCACCTGCTTCAGCACCTTGTA 783 >seq29057 Length=1177 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| || || || ||||||||||| |||| | || Sbjct 281 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGTACAGCCGTCTGGATCTCCCGCGAGGTGA 340 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 341 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 400 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||| | Sbjct 401 TGTCATTGACGAAGGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGAT 460 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 461 GCACCTGCTTCAGCACCTTGTA 482 >seq10856 Length=1684 Score = 158 bits (174), Expect = 1e-32 Identities = 141/177 (80%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 ||| |||||||| ||||||||||| |||| | ||| ||| ||||||||| ||||||| Sbjct 639 CAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGTGCGC 580 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||| || ||||||| | ||||||| |||| ||||||||||| || |||||||||| Sbjct 579 CAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGAT 520 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | |||| ||||||||| |||||| ||||||||||| ||||||||||| Sbjct 519 GCCCATGGCCTTGGACGAGATGCCCGTGTCGGGATGCACCTGCTTCAGCACCTTGTA 463 >seq57142 Length=29810 Score = 138 bits (152), Expect = 1e-26 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||| ||||| || | | || Sbjct 14533 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACGGCCGTCTGAATCTCCCGGGAGGTGA 14592 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||| || ||||||| || | | Sbjct 14593 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAATA 14652 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 14653 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 14712 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 14713 GAACCTGCTTCAGCACCTTGTAGA 14736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6098592901847697