Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq32459 232 1e-54 seq29057 210 3e-48 seq57142 201 2e-45 seq10856 179 6e-39 seq54865 118 2e-20 >seq32459 Length=1270 Score = 232 bits (256), Expect = 1e-54 Identities = 205/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 543 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 602 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | | | ||| ||||||||| | Sbjct 603 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGGGGTGGTGGAGCGCTTGTTGTAGT 662 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 663 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 722 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 723 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 782 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 783 ACACGTAGATCGAGTA 798 >seq29057 Length=1177 Score = 210 bits (232), Expect = 3e-48 Identities = 200/256 (78%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||| ||| ||||||| |||||| ||| Sbjct 242 TGTACTTGGTGACGGCCTTGGTGCCTTCAGAGACGGCATGCTTGGCCAGCTCGCCGGGCA 301 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || || || ||||||||||| || | | ||| ||| ||||||||| | Sbjct 302 GCAGCAGCCGTACAGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 361 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||| ||||| || ||||||| Sbjct 362 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCATTGACGAAGGAGTTCA 421 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||| ||||||||||| |||||||||| Sbjct 422 TGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGATGCACCTGCTTCAGCACCTTGT 481 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 482 ACACGTAGATCGAGTA 497 >seq57142 Length=29810 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| |||||||||||||||||| ||||||| || || | | Sbjct 14494 TGTACTTGGTGACGGCCTTGGTGCCCTCTGAGACGGCGTGCTTGGCCAGCTCTCCTGGGA 14553 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| ||||| |||| | ||| ||| ||||||||| Sbjct 14554 GCAGCAGGCGCACGGCCGTCTGAATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 14613 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || ||||||| || | |||||||||||||| ||||||| Sbjct 14614 GGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAATATGTCGTTGACAAAGGAGTTCA 14673 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| |||||||||| Sbjct 14674 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGTGAACCTGCTTCAGCACCTTGT 14733 Query 1485710 AAAC 1485713 | || Sbjct 14734 AGAC 14737 >seq10856 Length=1684 Score = 179 bits (198), Expect = 6e-39 Identities = 192/256 (75%), Gaps = 17/256 (7%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| | ||| Sbjct 686 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTT----------CCGG--- 640 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 639 ----CAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 584 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 583 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 524 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||| ||||||||||| |||||||||| Sbjct 523 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGATGCACCTGCTTCAGCACCTTGT 464 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 463 ACACGTAGATCGAGTA 448 >seq54865 Length=3586 Score = 118 bits (130), Expect = 2e-20 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 1019 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 1078 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC 1485557 || ||| |||||||| ||||||||||| Sbjct 1079 GGAGCAGCCGCACGGCCGTCTGGATCTC 1106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7905168446842899