Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5167 149 4e-31 seq46366 136 3e-27 seq74741 104 2e-17 >seq5167 Length=31550 Score = 149 bits (164), Expect = 4e-31 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||| || || || | |||| |||||||| ||||| ||||| || Sbjct 319 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 260 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| |||| ||||| ||||| ||||| |||||||| | ||||| || | || Sbjct 259 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGA 200 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || || ||| || || || || | ||| ||| ||||| Sbjct 199 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCAC--ATTCTCAATGGTGTCACTGGGCTCGA 142 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 141 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 92 Score = 134 bits (148), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||| || || || | |||| |||||||| ||||| ||||| || Sbjct 547 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 488 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| | || ||||| ||||| ||||| |||||||| | ||||| || | || Sbjct 487 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGA 428 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || || || || || || || | ||| ||| ||| | Sbjct 427 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCACTGGGCTCAA 370 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 369 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 320 >seq46366 Length=3433 Score = 136 bits (150), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| ||||||| | ||| || || || | |||| |||||||| ||||| ||||| Sbjct 2909 TTTCCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 2968 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| ||||| |||| |||| ||||| || || |||||||| | ||||| || | Sbjct 2969 GACAGGGTGCGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGA 3028 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCT 34925 || | || |||||||| | || || ||||| || || || | ||| ||| || Sbjct 3029 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCT 3086 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || || | ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 3087 CAACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 3139 Score = 131 bits (144), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | |||| ||||||||| ||||| ||||| || | | ||||| |||| Sbjct 3154 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATC 3213 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||||||||| || || |||||||| | ||||| || | || | || |||||||| Sbjct 3214 TTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 3273 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| ||| || || | || ||| Sbjct 3274 CTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCAACTTCCAGAGTGATG 3331 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| |||||||||||||| Sbjct 3332 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3366 >seq74741 Length=209 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| ||||| || ||| | || |||| ||||| || |||||||| ||| Sbjct 209 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAG 150 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | |||||||| | || | || |||||||| | || ||| ||||| || Sbjct 149 ATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--AT 92 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | ||| | | ||| || || | || |||||||| || || |||||||| | Sbjct 91 TCTCAATGGTGTCACTCGGCTCCACCTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTCA 32 Query 34965 CAAAGATCTGCAT 34977 | ||||||||||| Sbjct 31 CGAAGATCTGCAT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325279424693279