Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq66646 113 3e-19 seq103987 107 1e-17 >seq66646 Length=10888 Score = 113 bits (124), Expect = 3e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||||||||||| | |||| |||| | || || ||||| ||||||| Sbjct 10444 CAAAAACCGTATTGGTTGGATTCATTGCAACTTGGTTCTTCGCAGCATCACCAATCAACC 10503 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | ||| || ||| || || || ||||| || ||||| |||| Sbjct 10504 TCTCTGTATCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 10563 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || || |||| ||| ||||||| ||||| | | || || || | ||||| Sbjct 10564 TGATTTCCACCTTCCCATGTTGAAATACACCAACACAGGAATAGGTGGTGCCAAGATCAA 10623 Query 282870 TACCAATAGC 282879 | || | ||| Sbjct 10624 TTCCGACAGC 10633 >seq103987 Length=11775 Score = 107 bits (118), Expect = 1e-17 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 312 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 371 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| |||||||||||||||||| ||||| ||||| Sbjct 372 TCATTACGGTGCCCCTAAGGAAATGGAATCTTATTATCAAGAAATTGGGAGAGCTGGTCG 431 Query 131296 TGATGGA 131302 |||||| Sbjct 432 CGATGGA 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3735517516999866