Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq46366 96.9 3e-15 seq42353 93.3 4e-14 seq5167 86.0 6e-12 >seq46366 Length=3433 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| | ||||| || || || | || || || || || |||||||| || Sbjct 3139 GCCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 3198 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| | ||||| ||||| || |||||| ||||||| | ||||||||||| || Sbjct 3199 CAAGGTGCGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 3258 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| || || || | | || | ||||| |||| || || Sbjct 3259 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 3318 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | |||||||| |||| || || || || || ||||| Sbjct 3319 TTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3366 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 |||| || | ||| | || ||||| || || |||||||| ||| || |||| | Sbjct 2924 CGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 2983 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| | || || |||||| ||||||| | |||||||||||||| |||||||| ||| Sbjct 2984 TCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 3043 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || || || || | | || | ||||| |||| || ||||| | || | Sbjct 3044 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATG 3103 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| |||| || || || || || ||||| Sbjct 3104 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3138 >seq42353 Length=33545 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 151334 ACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTT-TGATTGCTTTT 151392 |||||||| | ||||| |||||||||||| || ||| ||| | || |||||||| || Sbjct 26751 ACTATTTCTGTACACAGATTGCTGCATTTGATGG-TCCCCAAGTTCTGCTGATTGCTCTT 26809 Query 151393 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTAT 151452 |||||||||| ||| ||||| | ||||||||||||||| || || | ||| ||| || Sbjct 26810 CCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTCTGTCTGAGATTCAAT 26869 Query 151453 AAT 151455 || Sbjct 26870 GAT 26872 >seq5167 Length=31550 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 |||| || | ||| | || ||||| || || |||||||| ||| || |||| | | Sbjct 535 CGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCG 476 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| || || || || ||| ||||||| | ||||||||||| || |||||||| ||| Sbjct 475 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 416 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || || || || | | || | || || |||| || || |||| || | Sbjct 415 TCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCAAGGGTGATG 356 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| |||| || || || || || ||||| Sbjct 355 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487908031741200