Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq64861 100 4e-16 >seq64861 Length=8568 Score = 100 bits (110), Expect = 4e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||| ||||||||||||| Sbjct 211 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGCCCGGGGTTCGATT 270 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 271 CCCCGACGGGGAG 283 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | |||||| |||||||||||||| Sbjct 212 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGCCCGGGGTTCGATTC 271 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 272 CCCGACGGGGAGG 284 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| ||||||||||| |||||| | |||| |||||||| | ||||||| Sbjct 283 CTCCCCGTCGGGGAATCGAACCCCGGGCTCCCGCGTGACAGGCGGGGATACTTACCACTA 224 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 223 TACTAACGAGGA 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 651994951121040