Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq57109 132 6e-26 seq68496 111 2e-19 >seq57109 Length=76961 Score = 132 bits (146), Expect = 6e-26 Identities = 542/844 (64%), Gaps = 18/844 (2%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || | || || || || || || || || || || || ||||| Sbjct 12172 ATCCAGTTCAGGTCTCCTGCCCCAAAAACACAGACAGAGCGAACATGAACTCCACTGCAT 12113 Query 162220 GGCGGATACAGGGCCCCATCGTCCACAT--CCCCCTCGTAGTATTGCCACTTAACGAACC 162277 || || || | || || | || |||| | || || |||| |||||||| || |||| Sbjct 12112 GGTGGGTAGGGTGCACCTT--TCGACATGTCACCTTCAAAGTACTGCCACTTGACAAACC 12055 Query 162278 TAGTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGA 162336 | | | || | |||||| || |||||||||| |||| || | || || || || Sbjct 12054 TGGCCAGCGCATTCATGTCAGAAACATCGTACTTGT-CACTAGAAGAAACTGCACCCGGG 11996 Query 162337 ACACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTC 162396 || | || | |||||| | || ||||||| || || ||||| || || || || || Sbjct 11995 ACTTCAGGGATTCTCTGAATTGTTGCCCACAAGTACTCATCTGGGCTGTAAGTGTCTTTT 11936 Query 162397 GACCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGAC 162453 | |||||| ||||||| | | |||| | | || | ||| || | Sbjct 11935 GCCCACTCAATGAACT---TAAGTATTTTGCTGCTTTCTAATACGTATTCTACAAATCTT 11879 Query 162454 CTGGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCT 162513 ||| | || | ||| || || ||||||||||| | || | | | ||| || | | | Sbjct 11878 CTGCTAACTACAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTTGT 11819 Query 162514 TTGTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTG 162573 |||||| || ||||| || | || || | | | | || || ||||||| Sbjct 11818 TTGTCTATGCCTGTGTTCTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTT 11759 Query 162574 GCCATCTTACTGGTAGACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTC 162633 | ||| || | | ||| || || | ||||| ||| | ||| || Sbjct 11758 ACTTCTTTATAAAGAGGCATTTTTTCCGTTTCCAAGCTGTTTTCACCTTTAAGGGCTTTT 11699 Query 162634 AGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATA 162693 | | || || || | |||||||| | |||||||| |||| ||||| || || Sbjct 11698 AATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATT 11639 Query 162694 ACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGG 162753 | |||||||| || || || ||| ||||| | | ||||| | || ||||| Sbjct 11638 AGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGC 11579 Query 162754 ACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCG 162813 || | ||||| || || || || || ||||| ||| ||| | ||||||||| || Sbjct 11578 ACCCTGCTCCATGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAAGACATTATCA 11519 Query 162814 AAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCT 162870 ||||| || ||||| ||| |||| || || | || | || || ||||| | || Sbjct 11518 AAACATGAGACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGA-CTTTC-TGTCA 11462 Query 162871 ACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATC 162930 || || | |||||| | |||||||||||| ||||| | || || | ||| || | |||| Sbjct 11461 ACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCATC 11402 Query 162931 TCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTG 162990 || || || || | ||||| || || || || || || || || || || || ||| Sbjct 11401 TCAATTTTGTGATAAACCACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTG 11342 Query 162991 AGAG 162994 |||| Sbjct 11341 AGAG 11338 >seq68496 Length=888 Score = 111 bits (122), Expect = 2e-19 Identities = 244/359 (68%), Gaps = 10/359 (3%) Strand=Plus/Minus Query 162630 CTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATT 162689 |||||| ||| || ||||| |||||||| | ||| ||||||||||||||| || Sbjct 470 CTTCAGGGCACGGACGATCTCAGCGTTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTT 411 Query 162690 AATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGG 162748 | | || ||| ||| | |||| | ||| ||||| | ||||| || |||| Sbjct 410 GAGGAAGTAGCGCCATGGCACGGGGC-TCCGCAACAGGTCCTGCATGCAGTTGAGGTCGG 352 Query 162749 CCTGGACGCGACTCCACGACGCGTACACGACGCTCT-CCAACCTAGTGGCGACAAAGACA 162807 |||| | || ||| || || || || || |||| |||| | | | || || |||||| Sbjct 351 CCTGCAGCCGGGACCAGGAGGCATAGACCAC-CTCTTCCAAGCGACTAGCCACGAAGACA 293 Query 162808 TTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACAT---CGGGTCCGCTTTC 162864 ||| ||| || | || || || ||| ||| ||| | |||| | || Sbjct 292 TTGGGGAAGCAGGCTACGATGGCCCGCACAGCCTCCTGGAAGGTGGCCGGGGAC---TTG 236 Query 162865 CTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCG 162924 || || | ||| |||||||| | ||||| |||| ||||| || || ||| | | |||| Sbjct 235 CTGTCAATGTGGACGCAGTAGACGTTCTGGGGGGTGTAGAGGGACCGCAGGAGCCGCTCG 176 Query 162925 AACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 |||||||| || || | ||| | || || || || || ||||||||||| |||||||| Sbjct 175 AACATCTCGATTTTGTTGTGGATGACCATGGAGTAGGCGATGGGGAACTCTGCCTCCTC 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577679018913600