Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq42353 107 2e-18 seq74741 102 8e-17 seq5167 91.5 1e-13 >seq42353 Length=33545 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| ||| ||||| | ||||| ||||||||||| ||| ||||| || ||||||||| Sbjct 26745 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 26804 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 147624 || ||||| ||||| | ||||||| | |||||||||||| ||| ||||| || | | Sbjct 26805 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTCTGTCTGAGAT 26864 Query 147625 TCAACGATA 147633 |||| |||| Sbjct 26865 TCAATGATA 26873 >seq74741 Length=209 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 ||||| || ||||||||||| || |||||| |||||| |||||||| |||| | || Sbjct 209 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAG 150 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || | | ||| || || ||||| |||||||| || || || ||| || | | Sbjct 149 ATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 90 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | || || |||||||||| |||| || | || ||||||||||| || || | | Sbjct 89 TCAATGGTGTCACTCGGCTCCACCTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTCACG 30 Query 132113 AAAATCTGCAT 132123 || |||||||| Sbjct 29 AAGATCTGCAT 19 >seq5167 Length=31550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| || | ||| | | | || || || || |||||||||||| || ||| || Sbjct 311 CAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 252 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| ||||| || |||| | |||| || | ||| ||||| || || |||||||| Sbjct 251 CCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTC 192 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || ||||| | || | || || | ||||| || || | || Sbjct 191 CTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGT 132 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || |||||||| || || | || ||||||||| Sbjct 131 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 92 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| || | ||| | | | || || || || |||||||||||| || ||| || Sbjct 539 CAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 480 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | ||||| ||||| || |||| | |||| || | ||| ||||| || || |||||||| Sbjct 479 CCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTC 420 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || |||| | || | ||||| | ||||| || || | || Sbjct 419 CTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCAAGGGT 360 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || |||||||| || || | || ||||||||| Sbjct 359 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475990765412760