Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq32459 197 2e-44 seq29057 170 3e-36 seq57142 156 6e-32 seq10856 145 1e-28 seq54865 95.1 2e-13 >seq32459 Length=1270 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 783 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 730 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 729 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 670 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| | | | |||| ||||||||||| |||||||| Sbjct 669 CTGGCGCACTACAACAAGCGCTCCACCACCCCCTCGCGGGAGATCCAGACGGCCGTGCGG 610 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 609 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 561 >seq29057 Length=1177 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||| ||| || || |||| || |||| ||||| Sbjct 482 TACAAGGTGCTGAAGCAGGTGCATCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 429 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||| ||||| |||| ||||||| | ||||||| ||| Sbjct 428 AGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 369 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| || || || Sbjct 368 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCTGTACGG 309 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||| |||||||| || ||||||| Sbjct 308 CTGCTGCTGCCCGGCGAGCTGGCCAAGCATGCCGTCTCTGAAGGCACCA 260 >seq57142 Length=29810 Score = 156 bits (172), Expect = 6e-32 Identities = 174/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| ||||| |||| |||| ||| |||| ||| Sbjct 14736 TCTACAAGGTGCTGAAGCAGGTTCACCCTGACACCGG-----CATC-TCCTCCAAGGCCA 14683 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| |||||||||||||| | || ||||||| || ||| | Sbjct 14682 TGGGCATCATGAACTCCTTTGTCAACGACATATTTGAGCGCATCGCTGGAGAAGCCTCCC 14623 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | |||||||||| ||| ||| | | || ||||| ||||| ||||||| Sbjct 14622 GCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATTCAGACGGCCGTGC 14563 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | | | || || ||||||| |||||||||||| |||||||||| Sbjct 14562 GCCTGCTGCTCCCAGGAGAGCTGGCCAAGCACGCCGTCTCAGAGGGCACCA 14512 >seq10856 Length=1684 Score = 145 bits (160), Expect = 1e-28 Identities = 169/229 (74%), Gaps = 23/229 (10%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||| ||| || || |||| || |||| ||||| Sbjct 463 TACAAGGTGCTGAAGCAGGTGCATCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 516 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 517 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 576 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 577 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 636 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| ||| | ||||||||||||||||||||||| Sbjct 637 CTG-------CCGG----------AAGCACGCCGTCTCCGAGGGCACCA 668 >seq54865 Length=3586 Score = 95.1 bits (104), Expect = 2e-13 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 ||||||||||| |||||||| ||| || ||| |||||| ||||||| ||||||||||||| Sbjct 1106 GAGATCCAGACGGCCGTGCGGCTGCTCCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCC 1047 Query 725133 GAGGGCACCA 725142 |||||||||| Sbjct 1046 GAGGGCACCA 1037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7167766609138842