Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq97605 104 2e-17 seq25895 104 2e-17 seq63031 86.0 5e-12 >seq97605 Length=2552 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 43929 CAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGT 43988 ||||||| || ||||| ||||| || || |||||||| |||||||| ||||| ||||||| Sbjct 2548 CAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAATATACATTCAGAAATGT 2489 Query 43989 ACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||||| || || || ||||| |||||| Sbjct 2488 ACAGTCTTCTTATTGACACCTACATTAAAGAT 2457 >seq25895 Length=23370 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| |||||| ||||| ||| ||| Sbjct 5429 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTACGTTCTAAATGGCGAATTGT 5488 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 5489 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 5548 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 5549 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 5585 >seq63031 Length=34312 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||||||||||| |||||||| || || ||||| || ||||||||| Sbjct 23794 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 23735 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| | || |||||||||| |||| || || ||||| | || || | ||| Sbjct 23734 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 23675 Query 44255 GA 44256 || Sbjct 23674 GA 23673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396951541516705