Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq63031 86.0 8e-12 seq42353 82.4 1e-10 >seq63031 Length=34312 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | |||||||||||| ||||| || || ||||| || |||| ||||| Sbjct 23671 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 23730 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| |||| | ||||| ||| || || || || |||||||| || ||||| ||||| Sbjct 23731 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAG 23789 Query 122797 GCAA 122800 |||| Sbjct 23790 GCAA 23793 >seq42353 Length=33545 Score = 82.4 bits (90), Expect = 1e-10 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||| | ||||||||||| | ||| | || || ||||| Sbjct 26729 CTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCC 26788 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 ||| |||| || || |||||| |||||| | || ||||| |||||||| || || || Sbjct 26789 CAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCC 26848 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||| ||||| |||| | ||||| | ||| Sbjct 26849 AGTCTCTGTCTGAGATTCAATGATAGCGTACCA 26881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627214451493600