Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq42353 105 8e-18 >seq42353 Length=33545 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | ||||| | | ||||| || |||||||| ||||| |||||||| ||||||||| Sbjct 26881 TGGTACGCTATCATTGAATCTCAGACAGAGACTGGCACACCGTACATGCTGTACAAAGAC 26822 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 | || |||| ||||| ||||| |||| ||||| ||||| | |||||| ||| Sbjct 26821 TCTTGCAACCGGAAGAGCAATCAGCAGAACTTGGGGACCATCAAATGCAGCAATCTGTGT 26762 Query 105008 ACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 |||||||| |||| | ||| |||||||||| Sbjct 26761 ACAGAAATAGTGGAGTATACCAGCAAAGATGAG 26729 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565 ||||| || ||| | |||| |||||||| || || || || || |||||||| ||||| Sbjct 22995 AACAGCCTTCTCCTTTCTCCCATGCCAACTGCTTCTACTGCTCAGATCTTGGGCAATAAC 22936 Query 105566 GAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 105625 |||| | |||| |||||||| | |||||||| | || |||| ||||||||||| Sbjct 22935 GAATCCATTGAGCCCTACACCAGTAACATCTACACACGCAGGGTCCTCTCGGGAGAGTTT 22876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582501532962840