Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5167 176 5e-39 seq46366 168 8e-37 >seq5167 Length=31550 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 321 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 380 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 381 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 440 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || || | || ||||| | ||||| || Sbjct 441 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 500 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || |||| || | ||||| Sbjct 501 ATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 547 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | || Sbjct 93 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 152 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||| || || || ||||||||||| || ||||| || || ||| Sbjct 153 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 212 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 213 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 272 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || |||| || | ||||| Sbjct 273 ATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 319 >seq46366 Length=3433 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || || |||||| | || Sbjct 3138 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 3079 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || |||||||| || ||| Sbjct 3078 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAG 3019 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| | || |||| || ||||| | ||||| || Sbjct 3018 CAGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGCACCCTGTCCGACTACAAC 2959 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||||||||| || ||||| || |||| || | |||||| Sbjct 2958 ATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGGA 2911 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || |||||||| || ||||| || |||||| | | Sbjct 3367 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTTGAGCCCAG 3308 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || ||||||||||| || ||||| || || || Sbjct 3307 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 3248 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| |||||||| || |||| || ||| | | ||||| || Sbjct 3247 GCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGGCGCACCTTGTCTGACTACAA 3188 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || | || ||||||| | ||||| Sbjct 3187 CATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTCAGAGGTGG 3140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569567991307920