Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq68496 224 1e-53 seq81577 100 4e-16 >seq68496 Length=888 Score = 224 bits (248), Expect = 1e-53 Identities = 578/867 (67%), Gaps = 20/867 (2%) Strand=Plus/Plus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| || || ||| ||||||||||| |||||| |||| | | | || ||| Sbjct 34 CGCCTGGCGAGTACCTGAACATGACGAAGGACTGCAGCAACTTCAAGGAGACCCGGCGGT 93 Query 13660 ATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGA 13719 | | | || ||||||| ||| |||| ||||| |||||||||||||| || || | Sbjct 94 TCATTGAGTTTCCGCTGAGCCAGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCA 153 Query 13720 TCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACC 13779 ||||| |||| ||||||||||||||||| |||||| || || ||||| |||| |||||| Sbjct 154 TCCACAACAAAATCGAGATGTTCGAGCGGCTCCTGCGGTCCCTCTACACCCCCCAGAACG 213 Query 13780 TCTACTGCGTCCACGTGGACTCCAAGT--CCGGCGACGAGTTCATCCGG-GGC-GTCTCG 13835 |||||||||||||| | ||| ||||| ||||| || ||| | || ||| || | Sbjct 214 TCTACTGCGTCCACATTGACAGCAAGTCCCCGGCCAC--CTTC--CAGGAGGCTGTGCGG 269 Query 13836 GCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTAC 13895 ||||||| |||||||| || || | |||| || || | || ||||| || Sbjct 270 GCCATCGTAGCCTGCTTCCCCAATGTCTTCGTGGCTAGTCGCTTGGAAGAGGTGGTCTAT 329 Query 13896 GGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCC 13955 | ||||||| || ||||||||||||||| ||||||| ||||||| |||| Sbjct 330 GCCTCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCGGAGCCCC 389 Query 13956 GTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTG 14015 || ||| | ||| | |||||| ||||| | |||||||| ||||||||||| Sbjct 390 GTGCCATGGCGCTACTTCCTCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCT 449 Query 14016 GAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCA 14073 |||||||| || || |||||| | ||| || ||||| | ||||| || || | | Sbjct 450 GAGATCGTCCGTGCCCTGAAGACGCTGCAGGGGCAGAACAGCATGGAGTCAGAGAAGCCC 509 Query 14074 TGCCCAACCACAAGCTGCACCGC-ATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTG 14132 | | || ||||| ||| ||| ||| | | |||| |||| | | | | Sbjct 510 T--CGGCCCTCAAGCAGCAGCGCTGGCAGTACCA-CCACGAAGTGGGGAAGATCATC-TC 565 Query 14133 GTGGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGA 14192 || ||| | ||| | || ||||| || | || ||||| || | || Sbjct 566 CCGG---ACAGCCACAG--AGAAACTGCCGCCACCCCACAACTATCCCATGTTCACAGGC 620 Query 14193 AACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTG 14252 ||||| ||| | | |||||| |||| |||||| | | || | || || ||| | Sbjct 621 AACGCGTACATCGTGGTCACACGGGCCTTCGTGCAGCACATCTTTGAGAACCCCACGGCG 680 Query 14253 GCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACC 14312 | | || | | ||| | ||||||| |||||||| ||||||||| | ||||||||| Sbjct 681 CAGCAGTTCCTCGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGCCACC 740 Query 14313 GTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCG 14372 | | | ||| ||| ||| || | || ||| | | ||||| | | |||| Sbjct 741 CTCAACCGCATGCCCGGCGTGCCGGGCGCCATGCCCCAGAATGACAAGTTCCAGCTCTCG 800 Query 14373 GACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAA 14432 |||||| ||| | | | | ||||||||||| ||| ||||| || | || || Sbjct 801 GACATGAACGCCCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAG 860 Query 14433 GGGGCCCTGTACCCGCCTTGCGACGGC 14459 || || | |||||||| ||| |||| Sbjct 861 GGCGCGCCCTACCCGCCCTGCACCGGC 887 >seq81577 Length=303 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 ||| | | |||||||||| ||||||| ||||||| ||||| |||| ||| | Sbjct 11 CGCCTCCGGGCCGACCTCCACTGCATGAGGGACCTGCTGGCCTCGGCCGTGCCCTGGCGC 70 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 |||||||||||| || || ||||||||| | |||||||||| ||||||||| ||| Sbjct 71 TACCTGCTCAACACCTGTGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCCGG 130 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACG 14055 |||||||| ||| | || ||||||| Sbjct 131 CTGCTGAAGGGCCTCAGGGGGAAGAACG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657881678012160