Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq25895 105 5e-18 seq51949 91.5 1e-13 >seq25895 Length=23370 Score = 105 bits (116), Expect = 5e-18 Identities = 137/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||| |||||||| || || ||||||||||| || || || ||||||| || Sbjct 1943 CATGTCTTTGTATTCTGCTCCAAAGTGTCTCCACTGGAAACCATAAACTGGTCCCAAATC 1884 Query 30283 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 1883 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 1825 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 |||| ||||| || || || | || |||||||||| ||||| || || || || || | Sbjct 1824 CCCAAATCTTCACACCTTTTGCGGACAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 1767 Query 30402 ACAG 30405 |||| Sbjct 1766 ACAG 1763 >seq51949 Length=29608 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| |||| || || |||||| | | ||| | |||||| || || Sbjct 26807 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 26866 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||| |||||||||||| | ||||| || ||| Sbjct 26867 ATGGAGAACCAGGTTTTTTTACCCATTATCAATGCATTCTGTTTACCT 26914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405794703348972