Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq25895 91.5 1e-13 >seq25895 Length=23370 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || |||||||| ||||| ||| | || || || || || ||||| |||| ||| ||| Sbjct 1809 GGTGTGAAGATTTGGGATGCTAATGGATCACGTGAGTTCCTGGATAAGCAGGGTTTCAGC 1868 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 | | |||||||| || ||||| || || || || |||||||||||||||||||| || Sbjct 1869 ACCAGAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTCCAGTGGAGACACTTTGGAGCA 1928 Query 34442 GAGTA 34446 || || Sbjct 1929 GAATA 1933 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||||||||||||||| || || || || ||||| || |||||||| Sbjct 1933 TATTCTGCTCCAAAGTGTCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 1874 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || || || | ||| ||||| |||||| Sbjct 1873 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTC 1814 Query 7019 ACCCC 7023 || || Sbjct 1813 ACACC 1809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447678868817520