Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq46366 132 1e-25 seq5167 129 1e-24 seq74741 102 2e-16 >seq46366 Length=3433 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || || |||||||| || |||| ||||| |||| || || | |||||| Sbjct 2926 CAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 2985 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | |||||| ||||| ||||| || | || || ||||| ||||| ||||||||||| Sbjct 2986 TTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 3045 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || || || || | ||||| || Sbjct 3046 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 3105 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 3106 CTTGCCTGTCA 3116 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || ||||| || || |||| ||||| || | ||| || | |||||| Sbjct 3154 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATC 3213 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| || ||||| ||||| ||||| || | || || ||||| ||||| ||||||||||| Sbjct 3214 TTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 3273 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || || || || | ||||| || Sbjct 3274 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGAGTGATGGT 3333 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | || | |||||||| Sbjct 3334 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 3369 >seq5167 Length=31550 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || || |||||||| || |||| ||||| |||| || || | |||||| Sbjct 305 CAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 246 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || || || || ||||| ||||||||||| Sbjct 245 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 186 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| || || || || | ||||| || Sbjct 185 CTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 126 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 125 CTTGCCAGTCA 115 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || || |||||||| || |||| ||||| |||| || || | ||| || Sbjct 533 CAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 474 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || || ||||| ||||| ||||||||||| Sbjct 473 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 414 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || ||||| || || || || || | ||||| || Sbjct 413 CTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCAAGGGTGATGGT 354 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 353 CTTGCCAGTCA 343 >seq74741 Length=209 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 ||||| |||| ||||| || | || || | |||||||| ||||| || || || ||| Sbjct 209 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAG 150 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || | | || ||||| || || || ||||||||||||||||||||| ||| ||| Sbjct 149 ATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 90 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 || |||||||| | ||||| || | ||||| ||||| || |||| || || | | Sbjct 89 TCAATGGTGTCACTCGGCTCCACCTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTCACG 30 Query 225703 AACACTTGCAT 225713 || | ||||| Sbjct 29 AAGATCTGCAT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190939997793854