Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq97605 116 3e-21 seq63031 107 2e-18 >seq97605 Length=2552 Score = 116 bits (128), Expect = 3e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || |||||||||||||| || | ||| |||||||| ||||| || || Sbjct 297 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 356 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||| || | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 357 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 416 Query 4692 ACTA 4695 |||| Sbjct 417 ACTA 420 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || || |||||||| |||||||||||||| || ||| Sbjct 2458 TCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCA 2517 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||||| || || || || || | ||||||||| Sbjct 2518 ATCTGGAAGCCATAGAAACAACGAGCTTCTGT 2549 >seq63031 Length=34312 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || | ||| ||||| | || ||||| || Sbjct 23673 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 23732 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 23733 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 23792 Query 4692 AC 4693 || Sbjct 23793 AC 23794 Score = 105 bits (116), Expect = 6e-18 Identities = 102/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| ||| || || | |||||| ||||| || || |||||||||||||||||||||| || Sbjct 28414 AAAGCTTCCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAACGCCAGAA 28473 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||||| |||||||| | ||| || | || || || |||||||| || | || || | Sbjct 28474 CATGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTG 28533 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 28534 ACAAATCAAC 28543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426507580773953