Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5167 123 6e-23 seq74741 122 2e-22 seq46366 122 2e-22 >seq5167 Length=31550 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| |||| | || | ||||||| Sbjct 304 AGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 245 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| ||||||||||| || | | || |||||||| || Sbjct 244 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 185 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||| ||| |||| | | |||| ||| ||| || ||||| || || Sbjct 184 TGGATCTTGGCTTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATG 128 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 127 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 93 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| |||| | || | ||| ||| Sbjct 532 AGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 473 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| ||||||||||| || | | || |||||||| || Sbjct 472 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 413 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | | || ||| ||| || ||||| || || Sbjct 412 TGGATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCAACCTCAAGGGTGATG 356 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 355 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 321 >seq74741 Length=209 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAG 151973 ||||| ||||||||||| || | | || | |||||||| || ||| ||||| ||| Sbjct 209 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAG 150 Query 151974 ATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTC 152033 || | |||||||||||| | | ||| |||||||| ||||| || ||| |||||| || Sbjct 149 ATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 90 Query 152034 TCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090 || | | |||| |||| || || || ||||| || || || || || || |||||| Sbjct 89 TCAATGGTGTC---ACTCGGCTCCACCTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTC 33 Query 152091 ACGAAGACCTGCAT 152104 ||||||| |||||| Sbjct 32 ACGAAGATCTGCAT 19 >seq46366 Length=3433 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| || | || || | ||||||||| | Sbjct 3160 CAAG-TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCTTCCA 3218 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| ||||||||||| || | | || |||||||| || || | Sbjct 3219 GTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 3278 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || |||||| |||| | | |||| ||| ||| ||||| ||||| || || | Sbjct 3279 TCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGAGTGATGGTCT 3335 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| || || |||||||| |||| ||||||||| Sbjct 3336 TGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 3369 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| |||| | || | ||||||| Sbjct 2927 AGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 2986 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| ||||||||||| || | | || |||||||| || Sbjct 2987 TCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 3046 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| ||||| || || || Sbjct 3047 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATG 3103 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 3104 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152281249334611