Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq13386 179 5e-40 seq41007 91.5 2e-13 >seq13386 Length=23710 Score = 179 bits (198), Expect = 5e-40 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||| ||||| ||| ||| |||||||| || |||||||| Sbjct 3177 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 3118 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || |||||||||||||| | || || Sbjct 3117 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTGGCGTACATCATCAAGCCTGGG 3058 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| || || |||| || ||||||| | ||| || ||| || || | ||||| Sbjct 3057 ACCAAACCGAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 2998 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || |||| || ||||||||||| |||||||||||| Sbjct 2997 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATC 2938 Query 9484 TG 9485 || Sbjct 2937 TG 2936 Score = 165 bits (182), Expect = 1e-35 Identities = 228/318 (72%), Gaps = 1/318 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| ||||| |||||| | ||||| || ||| | | || Sbjct 5232 GGAAAGCAGTGAAAGGACAGCCCTTCACGTTGTTGCAGACGAGCTTCTGTAAGGAGGCAG 5173 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| ||||||||||| |||||||||||| | |||| Sbjct 5172 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCAGGGG 5113 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || || ||||| || || | ||| | || Sbjct 5112 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAAAACGGTGCTCCGATCTCCACCATTG 5053 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | ||||| |||||||| || || |||||||| || | | || | ||||||||||| Sbjct 5052 TTTCACCAAAGATGGCACCCGGTCGTGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 4993 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 4992 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 4933 Query 8588 TTATTAATAAAAAATAAC 8605 ||||| || || || ||| Sbjct 4932 TTATTGATGAATAAAAAC 4915 >seq41007 Length=24362 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 ||||||| ||||| ||||| |||||||| | |||||||||||| ||| | | |||| Sbjct 10234 CTCCGCCAAAGGTACTGGGTTTCCAGTAGTCTGGGGAGCAGATGGGGTTTCCAAGAAGGC 10175 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || || || |||||||| || | ||| | ||||| || || || || | ||||| Sbjct 10174 CCTTCAGCGAAAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTT 10115 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 |||| || || | || || || || | ||||| ||| || | |||||| || || Sbjct 10114 GGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAG 10057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715943596664640