Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11]
104,141 sequences; 1,152,571,117 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq5167 140 3e-28
>seq5167
Length=31550
Score = 140 bits (154), Expect = 3e-28
Identities = 170/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | || || | ||| |||||||| ||| |||||||| ||||| |||||
Sbjct 551 ACAGCCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 492
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
||| ||||||||| |||| || |||||||||||||| || ||||| | ||| || || |
Sbjct 491 GGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGG 432
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
||||| || ||||||||| ||| || ||||| | | || || || | |||
Sbjct 431 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTC 372
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| | || || || || || ||||| ||||| || || |||||||||
Sbjct 371 AACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 320
Score = 134 bits (148), Expect = 1e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | ||| |||||||| ||| |||||||| ||||| |||||||| |||||||||
Sbjct 310 AGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 251
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||||||||| || ||||| | ||| || || | ||||| || |||
Sbjct 250 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 191
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|||||| ||| || |||| | | ||||| || | ||| ||||| | ||
Sbjct 190 TTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 131
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || ||||| ||||| || || |||||||||
Sbjct 130 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 92
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461702189989200
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |