Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq784 123 2e-23 seq19069 102 6e-17 >seq784 Length=2706615 Score = 123 bits (136), Expect = 2e-23 Identities = 91/106 (86%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4294 AGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATT 4353 || ||| |||||||||| | |||||||||| |||||||||| || |||||||||||||| Sbjct 2521490 AGCTCCCTGCTGAGAACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGAATG 2521431 Query 4354 GAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 |||||||| || ||||||||||| |||| | |||||||||| ||| Sbjct 2521430 GAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCTG 2521385 >seq19069 Length=15583329 Score = 102 bits (112), Expect = 6e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || ||||||||||| |||||||| || ||||| | ||||| | Sbjct 9791971 CTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAATCCATAAACTGGTCCCAAGTCTCCCT 9791912 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| |||||| | ||||| | ||| | |||||||| |||||||||| Sbjct 9791911 CCTCTCTGGTGCTAAAACCCTGCTTATCCAGGAATTCACGTGATCCATTAGCATCCCAAA 9791852 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||| || || || ||||||||| Sbjct 9791851 TCTTCACACCCTTAGCAGAGAGCTCTTTG 9791823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361167230771072