Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1840 105 8e-18 seq776 87.8 2e-12 seq19067 84.2 3e-11 >seq1840 Length=19535321 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | |||||| ||||| ||||| || ||||||| || | || | Sbjct 8679192 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCT 8679251 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 8679252 TCAGCCAGAAAATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 8679311 Query 24277 C 24277 | Sbjct 8679312 C 8679312 >seq776 Length=165087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 45937 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 45996 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 || || || || || ||||| || | || |||||| | | || || | |||||||| Sbjct 45997 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCCAAGTGCCACGGC 46056 Query 54149 TCCAAGTATATGGTCATAACTCCAGG 54174 |||| ||| |||| | | | ||||| Sbjct 46057 TCCAGGTAGATGGCAAAAGCCCCAGG 46082 >seq19067 Length=13999166 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 24581 |||||||| |||||||||||||||||||||||||| |||| ||||| | ||| ||| Sbjct 10809612 TTTTCATTTACTATTCCGTCACTGGCTGCAAAAAATGCCAGAACATGAGAGAGAAAGTAT 10809671 Query 24582 TTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| |||| | | || || ||||| Sbjct 10809672 TTTTCATCTGCTTTCAGCTTGTTCCA 10809697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593580056770560