Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq199 143 3e-29 seq940 122 1e-22 >seq199 Length=1914134 Score = 143 bits (158), Expect = 3e-29 Identities = 196/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 83125 GCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGG 83184 |||||| | || | | |||||||||||||||||||| ||||| ||||| || || || Sbjct 101578 GCCGTCGGGGCCGATGAGGAACTTCTCGAAGTTCCAGGAGACGTCATTGCGACAGACGGG 101519 Query 83185 AGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGG 83244 |||||| ||| ||| |||| | ||| || | | ||||||| || || Sbjct 101518 GGACCAGATGATGTACTGCGGGTTGGTCATCAGGGAGGAGGGGTCGTCGTGCGGGAAGGG 101459 Query 83245 CAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTT 83304 ||| |||||| |||| || |||||| || || || | ||||| ||||||||||| Sbjct 101458 CAGCGCCTCTTTCAGGAGGGTGAAGAGGGGGTGCGCGTTCTTCCCGTTCACCTCGCACTT 101399 Query 83305 CTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGG 83364 |||||| | || || || |||| | | ||||| |||||||| ||||||| ||| | | | Sbjct 101398 CTCGAACATGATGAAATTGGGCTTGTACCCGTTGCCAGGACGAACGTGCTCCAGCGCAAG 101339 Query 83365 CAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGA 83398 || |||||| ||||| | ||||||||| || Sbjct 101338 CATGATCTCCTCATTCGTAGTATTTTCCTGGGGA 101305 >seq940 Length=2434 Score = 122 bits (134), Expect = 1e-22 Identities = 212/300 (71%), Gaps = 10/300 (3%) Strand=Plus/Minus Query 83065 CTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAG--CGGTGGCTGTACCTGCGCACGGGC 83122 || |||||||||||||| || || |||| | ||| ||||||| | || | || Sbjct 1202 CTGGATGTCGGGCTCCA--GCTGGGCCGTGGCCGTGCGGGGGCTGTAGCGCCGGAAAGGT 1145 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 || || | ||||||| |||||||||||||||||| | | |||| ||| | ||| Sbjct 1144 TCCCCCTCGGGGCCCACCAGGAACTTCTCGAAGTTCCATGAGATGTCGGAGCGTCGCACG 1085 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTC-ATGTCGTCGCTAGGCGC 83241 || ||||| | || |||| ||| ||| || |||| | | |||||| || | Sbjct 1084 GGGCTCCAGGTGAAGAAACGGGGCTCGGTCATCAG-GTGCCCCACCTCGTCGGCTGGGGT 1026 Query 83242 CGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTCG 83299 |||||| || ||| |||| |||| || || || ||| || ||||| |||| | Sbjct 1025 GGGCAGGTGTGCTTTCAGGTAGGCAAAGACTGGGTGGGTGTCCT-GC-CCGTTCACCTGG 968 Query 83300 CACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGG 83359 ||||||| |||||| | ||||| ||||||||||||||||| || | |||||||||||| Sbjct 967 CACTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCGTTCCCTGGCCTCACGTGCTTCAGG 908 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 11/155 (7%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGG- 83449 |||||| ||||||||||| || ||||| || ||||| ||||||| |||| || Sbjct 653 CCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACCACCAGCC-------TCCTCGGG 601 Query 83450 ---CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGAC 83506 ||| ||| |||| ||| | ||| ||||| |||| ||||||| | ||||||||||| Sbjct 600 TAACGCGCCTGGAGCTGGTTGAGCTGGGTGTAATCCCTGACCGTGGTGCCTCAGAGGGAT 541 Query 83507 GCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 || |||||||||||||| | ||||||||||| || Sbjct 540 GCCACGTTCTCGATGAGGACCACCCGGCCCCGGAA 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608651662842880