Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq19069 105 5e-18 >seq19069 Length=15583329 Score = 105 bits (116), Expect = 5e-18 Identities = 136/180 (76%), Gaps = 7/180 (4%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||||||||| |||||||| |||||||||||||| ||||| | |||||| || ||| Sbjct 9791966 TATTCTGCTCCAAAGTGCCTCCACTGGAATCCATAAACTGGTCCCAAGTCTCCCTCCTCT 9791907 Query 97462 CTATCACAGAAACCAAGCTTATCTA--AATAGGACCTAGATCCATTTGCATCCCAAATGT 97519 || | ||||| ||||||| | ||| || | |||||||| ||||||||||| | Sbjct 9791906 CTGGTGCTAAAACCCTGCTTATCCAGGAAT-TCACGT-GATCCATTAGCATCCCAAATCT 9791849 Query 97520 GCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA-ACAAT 97578 |||||| || | ||||||||| | ||||| || || | ||| |||| ||||| Sbjct 9791848 TCACACCCTTAGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAGACAAT 9791791 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| || || ||||| ||| Sbjct 9796499 GTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAACGGCACTCCT 9796440 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 ||||||||||| | || || ||||| | || || || | | |||| ||||| Sbjct 9796439 AGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTTGAACATAG 9796380 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | | |||| || || ||||| ||||| Sbjct 9796379 AACTGGCAAAGGGCATGGCATGGTGGCAAAGCCAT 9796345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346703393527040