Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1561 114 1e-20 >seq1561 Length=6025351 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| || || |||||| ||| || ||||| || ||| Sbjct 667054 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 667113 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || | |||||| ||||| || ||||| |||||||| || || || Sbjct 667114 GCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 667173 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || ||| || || | ||| | || ||||| ||||||||| Sbjct 667174 ACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGAGTT 667233 Query 118722 TTTACAAAAATCTGCATGGCT 118742 || || || ||||||||| || Sbjct 667234 TTCACGAAGATCTGCATGCCT 667254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433729560461824