Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq392 93.3 8e-14 >seq392 Length=2345782 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||||||| | || | ||||| ||||| |||||||||| |||||||| Sbjct 1983369 GCTTTTTTTGGAGCTCAGATGAACGCATTTATTCATGTCATTATGTACATGTATTATGGA 1983428 Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| ||| | |||||||| || || |||||||| || || | || || Sbjct 1983429 TTAGCTGCCTGTGGCCCTAAATTTCAGAAA-TACCTTTGGTGGAAGCGATACTTGACCAT 1983487 Query 52176 AATGCAGTTGGTA 52188 | |||| ||||| Sbjct 1983488 ATTGCAACTGGTA 1983500 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || | || ||||| || ||||| || || Sbjct 1983990 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTTTCTATTTATATTGATTGTCCTTT 1984049 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| |||| | ||||| || ||||||| Sbjct 1984050 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 1984109 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | || || ||| Sbjct 1984110 TAACTTCTACTATCGGACTTATAAG 1984134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922976709882880