Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1055 392 2e-104 seq262 113 3e-20 >seq1055 Length=9946159 Score = 392 bits (434), Expect = 2e-104 Identities = 692/1001 (69%), Gaps = 12/1001 (1%) Strand=Plus/Minus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGG---CCCAAAGGAAGTTCATACAG 107684 ||||| ||||| || | ||||| | |||||||| ||| || |||||| || Sbjct 3048421 TACCTGAACATGACGAAGGACTGCGGCAACTTCAAGGAGACCC---GGCGGTTCATTGAG 3048365 Query 107685 TTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAG 107744 ||||| ||||| | || ||| ||| |||||||| |||||||| ||||| |||| | Sbjct 3048364 TTCCCGCTGAGCCAGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACAAC 3048305 Query 107745 AAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGT 107804 || || || | || || ||||| ||||| || | || | || |||||| | |||||| Sbjct 3048304 AAAATCGAGATGTTCGAGCGGCTTCTGCGGTCCATCTACACACCACAGAACGTCTACTGT 3048245 Query 107805 GTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 |||||| |||| || ||||| | ||||| || ||||| || |||||| | | Sbjct 3048244 GTCCACATGGACAGCAAATCCCCGGCTGACTTCCAG-GAGGCTGTGCGGGCCATCGTCGC 3048186 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||||||||||||||| ||||||| ||| |||||| || ||||||||||| Sbjct 3048185 CTGCTTCCCCAATGTCTTTGTGGCCAGCCGCCTGGAAAGGGTGGTCTACGCCTCCTGGTC 3048126 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAA 107983 | |||| |||||||| ||||| ||| | ||| || | |||||| | ||||||||| Sbjct 3048125 TCGCCTGCAGGCTGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCGTGCCATGGCG 3048066 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 || | || || || ||||| || || |||||||| ||||||||||||||||| |||| Sbjct 3048065 CTATGTCCTCAACACCTGCGGCACTGATTTCCCCATCAAGACCAATGCCGAGATTGTCCG 3048006 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaa 108103 ||||| ||| || || |||| ||||||| |||||||| ||| || || | ||| Sbjct 3048005 TGCCCTGAAGGTGCTGCAGGGGCAGAACAGCATGGAGTCCGAGAAGCCCTCGGCTCTCAA 3047946 Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGAT 108163 | |||||| |||| | || ||| || | | | || || || | Sbjct 3047945 GCGGGAACGCTGGCGTTACCATCACGAAGTGGGGGATTCCATCTCCCGGACTGCCAGGGA 3047886 Query 108164 GAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTC 108223 ||| || || || | | | |||||||||||||| |||||||| | |||| | | Sbjct 3047885 GAAACTGCCGCCACCCCACAGCTCCCCCATGTTCACAGGCAATGCCTACATCGTGGTCAC 3047826 Query 108224 TCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGT 108283 || | |||||| || || |||| || ||||| | | | | | | || |||| Sbjct 3047825 GCGGGACTTTGTGCAGCACATCTTCGAGAACCCCACGGCGCGGAAGTTCCTCGAGTGGGC 3047766 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGG 108341 ||| |||||||| ||||||||||| ||| ||||||||||||| | || ||| ||| | Sbjct 3047765 CAAGGACACCTACAGCCCCGACGAGCACGTCTGGGCCACCCTCAACCGCATGC-CCG-GC 3047708 Query 108342 ATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCC 108401 |||| ||| | | || || ||||| || |||| ||||||| ||| | || Sbjct 3047707 GTGCCGGGCGCCATGCCCCAGAACGACAAGTTCCAGCTCTCCGACATGAACGCCCTGCCC 3047648 Query 108402 AGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461 | | |||||||||||||||| ||||| || |||| ||| ||||| || | ||| Sbjct 3047647 CGCGTGGTCAAGTGGCAGTACCTGGAGGGTGACACCAGCCAGGGCGCGCCCTACCCGCCC 3047588 Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521 ||| | || || | | | ||| ||||||| ||||||| || ||| || |||| | Sbjct 3047587 TGCACCGGCCGGCACCAGCGCGCCGTCTGCATCTACGGGGTGGGCGACGTGCCCTGGCTG 3047528 Query 108522 CTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTG 108581 |||| | | | ||||||||||| |||||||| | ||| || ||| ||| || | | Sbjct 3047527 CTCCGGCAGCCCCACCTCTTGGCCAACAAGTTCGCCCCCTCGGGGGACGATGCCGCCATC 3047468 Query 108582 CAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 ||||| | | ||| |||| || || | |||| |||| || Sbjct 3047467 CAGTGTCTCGCGGAGCACCTGCGACACACGGCCCTCTACGG 3047427 >seq262 Length=1555650 Score = 113 bits (124), Expect = 3e-20 Identities = 228/332 (69%), Gaps = 10/332 (3%) Strand=Plus/Minus Query 108231 TTTGTCCAACATGTCTTAGACAACC-CTAAATCCCAAAGACTGGTTGAATGGGTCAAAGA 108289 ||||| || |||| ||||| ||| | |||| | ||| | |||| |||| ||||| Sbjct 337729 TTTGTAGAATATGTATTAGAAAACAACAAAATACTCAAGT-TCATTGAGTGGGCAAAAGA 337671 Query 108290 CACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TGCCTG 108348 ||||| ||||| || || |||| ||||| || ||||| | ||| || | | || | Sbjct 337670 TACCTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA-TCCCTGAAGTTCCAG 337612 Query 108349 GCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 108405 | | ||| || || || |||||| || | || ||||||| ||| | ||||| Sbjct 337611 GTGCAGTTTCTTCTAGTGAC---AAGTATGACGTTTCTGACATGAATGCACTGGCCAGAT 337555 Query 108406 TCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCT 108465 | ||||||||||||||| || || ||||| || || || || || |||| ||| Sbjct 337554 TTGTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAAAGGTGCACCCTACCCACCATGCA 337495 Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCC 108525 |||| | || || | |||| ||| |||| ||||||||| ||||||| || | Sbjct 337494 GTGGAGTTCACGTTCGGTCTGTCTGTGTTTTTGGGGTAGGGGACCTGAACTGGATGCTAC 337435 Query 108526 AGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| ||| |||| || || ||||||||| Sbjct 337434 GAAACCACCACTTCTTCGCTAATAAGTTTGAC 337403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348187848400128