Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1561 125 6e-24 seq904 113 4e-20 >seq1561 Length=6025351 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| |||||||| ||||||||||| ||| ||| |||| ||| Sbjct 667270 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 667329 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| |||||||| || | || ||||||||| Sbjct 667330 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGG 667389 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| ||| || |||||| Sbjct 667390 ATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTG 667449 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || ||||| |||||||| ||||| |||||||| Sbjct 667450 CCAGTCAGGGTCTTCACGAAGATCTGCATGTT 667481 Score = 113 bits (124), Expect = 4e-20 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| || ||||||||| ||||||||||| ||| ||| | || |||| Sbjct 667043 CAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCA 667102 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || ||||| |||| || ||| |||||||| || | || ||||||||| | Sbjct 667103 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGA 667162 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| || |||| ||| || ||||||| Sbjct 667163 TCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGC 667222 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | |||||||| ||||| ||||| |||||| Sbjct 667223 CAGTCAGAGTTTTCACGAAGATCTGCATG 667251 Score = 107 bits (118), Expect = 2e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| || ||||||||| ||||||||||| ||| ||| |||| |||| Sbjct 666815 CAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCA 666874 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| |||||||| || | || |||||||| | Sbjct 666875 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGGA 666934 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | |||| | ||||||||||| ||| || ||||||| Sbjct 666935 TCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGC 666994 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | |||| |||||||| ||||| |||||| Sbjct 666995 CTGTCAAGGTCTTCACGAAGATCTGCATG 667023 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| ||| ||| |||| ||||| || || || || || Sbjct 666604 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAG 666663 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| |||||||| || | || |||||||| || || ||| || Sbjct 666664 ATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTT 666723 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||||||||||| ||| || |||||||| |||| |||||||| Sbjct 666724 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACG 666783 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 666784 AAGATCTGCATG 666795 >seq904 Length=4018826 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || ||| |||| ||||| || || || ||||| Sbjct 3351943 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAG 3352002 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| |||||||| || | || ||||||||| || || ||| || | Sbjct 3352003 ATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 3352062 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| || || | ||| || |||||||| ||||| ||||||||| Sbjct 3352063 TCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATAGTCTTGCCAGTCAGGGTCTTCACA 3352122 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 3352123 AAGATCTGCATG 3352134 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| ||| ||| |||| ||||| || ||||| || || Sbjct 3352399 TCCTTCTGGATGTTGTAGTCAGACAGCGTGCGCCCGTCTTCCAGCTGCTTTCCAGCAAAG 3352458 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| ||||| || || | || ||||||||| || || || || | Sbjct 3352459 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTC 3352518 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | || || || ||||| ||||| ||||||||| Sbjct 3352519 TCGATGGTGTCACTGGGCTCAACCTCGAGAGTGATAGTTTTGCCAGTCAGGGTCTTCACA 3352578 Query 45326 AAGATTTGCATGTTG 45340 ||||| ||||||||| Sbjct 3352579 AAGATCTGCATGTTG 3352593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394983368720512