Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1561 96.9 3e-15 seq904 82.4 6e-11 >seq1561 Length=6025351 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| ||| || || ||||| || || ||||||||||| | | Sbjct 667252 CCTCCCCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 667311 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||| || ||||| ||| |||| || || || || || ||| Sbjct 667312 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 667371 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | |||||| | | ||| ||||||| |||||| Sbjct 667372 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACC 667431 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAttttt 18329 || | ||||||| | ||||| |||| || || || || || ||||| ||| Sbjct 667432 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTTT 667482 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || ||||| || | || || | || || || ||||| || || |||||||||| Sbjct 666564 GTTA-CCACCCCGCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGT 666622 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 | | || || | ||||||| || ||||| ||| |||| || || || || || Sbjct 666623 CAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGG 666682 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 ||| | ||||||||| || || | |||||| | | ||| ||||||| ||||| Sbjct 666683 GGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCT 666742 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAt 18325 | || | ||||||| | ||||| ||||| || || || || || ||||| Sbjct 666743 CCACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 666794 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | || || || || || || || ||||||||||| | | Sbjct 666796 CCACCCCTCAGACGAAGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 666855 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||| || ||||| ||| |||| || || || || || ||| Sbjct 666856 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 666915 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | |||||| | | ||| ||||||| |||||| Sbjct 666916 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 666975 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAt 18325 || | ||||||| | ||||| ||||| || || || || || ||||| Sbjct 666976 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 667022 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | || || || || || || || ||||||||||| | | Sbjct 667024 CCACCCCTCAGACGAAGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 667083 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| || |||| || || || || || ||| Sbjct 667084 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGA 667143 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | |||||| | ||| ||||||| |||||| | Sbjct 667144 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACT 667203 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAt 18325 || | ||||||| | ||||| |||| ||||| || || || ||||| Sbjct 667204 TCCAGGGTGATGGTCTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 667250 >seq904 Length=4018826 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||||| || || | ||||||| || Sbjct 3351931 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCAGCTGC 3351990 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| || |||| || || || || || ||| | ||||||||| || || | Sbjct 3351991 TTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 3352050 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| |||||| ||||| |||||| | ||||| ||| Sbjct 3352051 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATAGTCTTGCCAGTC 3352110 Query 18303 AATGTTTTTACAAAAATTTGCAt 18325 | || || ||||| || ||||| Sbjct 3352111 AGGGTCTTCACAAAGATCTGCAT 3352133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379255825280640