Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq776 123 2e-23 seq1561 120 3e-22 seq904 114 1e-20 seq19067 84.2 2e-11 >seq776 Length=165087 Score = 123 bits (136), Expect = 2e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| || ||| |||||||| | || || || || || ||||| | ||| || | Sbjct 44073 CCACCTCATCCTTGCTGGTGTACTCCATGATCTCTGTGCACAGGTTGCTGCTCTTGATGG 44132 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || ||||||||| || || ||||| || ||||||||||||||||| || | Sbjct 44133 TCCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 44192 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 ||||||||||| ||||||||||||||| || Sbjct 44193 TGCCCGTCTCGGTCTGCGACTCGATGATGGC 44223 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 ||||| || |||| || ||||| || ||||| || || |||| || || | ||| ||| Sbjct 45934 TCAACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGC 45993 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 ||| ||||| || |||||||| ||||| || | || || || | |||| |||||| Sbjct 45994 TGCTCTTCTTTCCCAGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCCAAGTGCCAC 46053 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| ||||| | |||||| || || ||||||| Sbjct 46054 GGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 46087 >seq1561 Length=6025351 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| || ||||| ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 667482 AAACATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCC 667423 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | |||| ||||| | || ||||||||||||| | || ||||| Sbjct 667422 CAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 667363 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | || || || |||||||| ||| |||||||| || || || || Sbjct 667362 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA 667303 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || || |||| || | |||||||| || Sbjct 667302 CAACATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTGAGGGGAGG 667252 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || |||||||| ||||| || |||||| | || ||||| || Sbjct 667251 CATGCAGATCTTCGTGAAAACTCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAG 667192 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || |||||||| Sbjct 667191 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 667132 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| ||||||| || || || || || Sbjct 667131 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 667072 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||| ||||| || ||| | |||||||| || Sbjct 667071 CATCCAGAAGGAGTCTACTCTGCATCTTGTGCTTCGTCTGAGGGGTGG 667024 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||||||||| || |||||| | || || || || Sbjct 667023 CATGCAGATCTTCGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 666964 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| ||||| | || |||||||||||| | || |||||||| Sbjct 666963 TGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCCGACCA 666904 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| |||||||| || || || || || Sbjct 666903 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 666844 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||| ||||| || ||| | |||||||| || Sbjct 666843 CATCCAGAAGGAGTCTACTCTGCATCTTGTGCTTCGTCTGAGGGGTGG 666796 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||||||||| || |||||| | || || || || Sbjct 666795 CATGCAGATCTTCGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 666736 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| ||||| | || |||||||||||| | || |||||||| Sbjct 666735 TGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCCGACCA 666676 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| |||||||| || || || || || Sbjct 666675 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 666616 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || ||||| || || ||||| || || | ||| |||| |||| Sbjct 666615 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGCGGGGTGGTA 666566 >seq904 Length=4018826 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 3352134 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACCCTTGAAGTTGAGCCCAG 3352075 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || |||||||| Sbjct 3352074 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 3352015 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| |||||||| || || ||| || || Sbjct 3352014 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCTTGTCCGACTACAA 3351955 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| || || ||||| || || | |||||||| || Sbjct 3351954 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 3351907 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| |||| |||||||| Sbjct 3352362 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAACCCAG 3352303 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | || || | || |||||||||||| | || || ||||| Sbjct 3352302 TGATACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCTGACCA 3352243 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| |||||||| ||| || || || || Sbjct 3352242 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCTGACTACAA 3352183 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| || || ||||| || || | |||||||| || Sbjct 3352182 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 3352135 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| |||||||| ||||| |||| ||||| || Sbjct 3352592 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACTATCACTCTCGAGGTTGAGCCC 3352533 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | || ||| | || ||||||||||||| | || || ||| Sbjct 3352532 AGTGACACCATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAC 3352473 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || ||||| || ||| |||||||| || || || || Sbjct 3352472 CAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGGCGCACGCTGTCTGACTAC 3352413 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || ||||| || || | || ||||| || Sbjct 3352412 AACATCCAGAAGGAATCCACCCTCCATCTTGTGCTCCGTCTCAGGGGTGG 3352363 >seq19067 Length=13999166 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || || || ||||| || ||||||||||| |||||| || ||||||||| || Sbjct 10805210 GCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGGTTG 10805151 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||||| | ||||||||||| || ||||| ||| ||| || Sbjct 10805150 AAGAAGAGGGGCCTGATGCCTGGACTGACCTTTTCCAATGA 10805110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445660129290240