Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq19067 120 4e-22 seq1840 105 8e-18 seq776 87.8 2e-12 >seq19067 Length=13999166 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| || ||||| ||||| ||||| | ||| | Sbjct 10805090 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTCAGTCCAGGCATCAGGCCCCTCTTCT 10805149 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||||||||| | ||| || || || ||||||||||| ||||| || |||||||||| Sbjct 10805150 TCAACCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACAGCAGCAAAGG 10805209 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 10805210 CAACCACTCTCTCACC 10805225 >seq1840 Length=19535321 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | |||||||||||| ||||| || ||||||| || | || | Sbjct 8679192 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCT 8679251 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || || || || || || ||||||||||||||||| ||||| ||||| | Sbjct 8679252 TCAGCCAGAAAATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 8679311 Query 33724 C 33724 | Sbjct 8679312 C 8679312 Score = 82.4 bits (90), Expect = 1e-10 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 33271 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 33330 |||| ||||| |||||||| | || |||||||| || || || || || ||||| || | Sbjct 8677920 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCT 8677978 Query 33331 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 | ||||||| || || ||||||||||| ||||| ||||| Sbjct 8677979 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 8678018 >seq776 Length=165087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| ||||||||||||||||| || || | || || ||||| | || || Sbjct 45937 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 45996 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 || || || || || ||||| || | || |||||| | | || || | |||||||| Sbjct 45997 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCCAAGTGCCACGGC 46056 Query 63387 TCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| ||||| | | | ||||| Sbjct 46057 TCCAGGTAGATGGCAAAAGCCCCAGG 46082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629667451484160