Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1840 114 1e-20 seq19067 111 2e-19 >seq1840 Length=19535321 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| || |||||||| ||||| || | || ||||| ||||||| ||| | Sbjct 8679192 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCT 8679251 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| || |||| || || || || |||||||| ||||| || ||||| ||||| | Sbjct 8679252 TCAGCCAGAAAATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 8679311 Query 13802 CTATTAGTCGTTCTCC 13817 ||| || |||||||| Sbjct 8679312 CTACTACACGTTCTCC 8679327 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 13913 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||||| | | |||||| || || || || | || ||||||||||| ||||||| Sbjct 8681312 TCTCTTTAGAATCTTTAATGTAGGTGTCGATGAGAAGACTGTACATTTCAGAATGTATGT 8681371 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 |||| || || ||||| || ||||| ||||| | |||||||| |||||| || Sbjct 8681372 TTTCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 8681426 >seq19067 Length=13999166 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || ||||| || | ||| ||||||| || | || | Sbjct 10805090 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTCAGTCCAGGCATCAGGCCCCTCTTCT 10805149 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | ||||||||||| ||||| || || || |||||||| || || ||||| |||||||| | Sbjct 10805150 TCAACCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACAGCAGCAAAGG 10805209 Query 13802 C 13802 | Sbjct 10805210 C 10805210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478474704430080