Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq19067 129 8e-25 seq1840 114 2e-20 seq776 93.3 6e-14 >seq19067 Length=13999166 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||| || ||||| ||||| ||||| | ||| | Sbjct 10805090 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTCAGTCCAGGCATCAGGCCCCTCTTCT 10805149 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||||||||||| ||||| || || ||||||||||| ||||| || || ||||||| Sbjct 10805150 TCAACCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACAGCAGCAAAGG 10805209 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 10805210 CAACCACTCTCTCACC 10805225 >seq1840 Length=19535321 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | |||||| ||||| ||||| || ||||||| || | || | Sbjct 8679192 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCT 8679251 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 8679252 TCAGCCAGAAAATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 8679311 Query 42207 C 42207 | Sbjct 8679312 C 8679312 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 41754 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCT 41813 |||| ||||| |||||||| | || |||||||| || || || || || ||||| |||| Sbjct 8677920 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCT 8677978 Query 41814 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 | ||||||| || || ||||||||||| ||||| ||||| Sbjct 8677979 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 8678018 >seq776 Length=165087 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||| Sbjct 45937 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 45996 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || || || ||||| || | || |||||| | | || || | |||||||| Sbjct 45997 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCCAAGTGCCACGGC 46056 Query 72142 TCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 46057 TCCAGGTAGATGGC 46070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670979200414720